Detailed information of Bpl_scaf_41436-1.24 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_41436-1.24ENDONUCLEASE III-LIKE PROTEIN 1Bpl_scaf_41436126963137227-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00633HHHHelix-hairpin-helix motifMotifInterproscan
PF00730HhH-GPDHhH-GPD superfamily base excision DNA repair proteinDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000445Conserved_siteHelix-hairpin-helix motifInterproscan
IPR003265DomainHhH-GPD domainInterproscan
IPR003651Conserved_siteEndonuclease III-like, iron-sulphur cluster loop motifInterproscan
IPR011257Homologous_superfamilyDNA glycosylaseInterproscan
IPR023170Homologous_superfamilyHelix-hairpin-helix, base-excision DNA repair, C-terminalInterproscan
IPR030841FamilyEndonuclease III-like protein 1Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR43286ENDONUCLEASE III-LIKE PROTEIN 1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000703Molecular Functionoxidized pyrimidine nucleobase lesion DNA N-glycosylase activityInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0003906Molecular FunctionDNA-(apurinic or apyrimidinic site) endonuclease activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0006284Biological Processbase-excision repairInterproscan
GO:0006285Biological Processbase-excision repair, AP site formationInterproscan
GO:0006296Biological Processobsolete nucleotide-excision repair, DNA incision, 5'-to lesionInterproscan
GO:0019104Molecular FunctionDNA N-glycosylase activityInterproscan
GO:0051539Molecular Function4 iron, 4 sulfur cluster bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10773NTH; endonuclease IIIEC:4.2.99.18
Base excision repair ko03410PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_41436-1.24 global RNA-seq network
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