Gene detail

Detailed information of Bpl_scaf_4125-0.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_4125-0.3	TUMOR NECROSIS FACTOR RECEPTOR	Bpl_scaf_4125	34228	42766	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_4125-0.3

TCAGAAGGAAGATAACACAATAATATGCACATGTCCTAAAAGGTTTCAGTATATAGGGCTTGACCACACAATGGAGTGTAGAAAATGTTCTGTGTGTCCGGCAGGGTATGGCGTGAAGTCTAAATGTACTATATATAATGATACTGTCTGTGAGAAATGTAAAGCCGGGTATTATTCCAGAAGAGGTTCTAAGTATTGCAAAAAGTGCCGAGAATGCCCAGAAAACTATCACGTGATACATGTATGCACATTTGACCATAATACGAGATGCAAACCATGCAAACAGGGGCGATATTATTCTAAAGAAAAAAACAAGTGTCTAAAATGTCACGCATGTCCTCCTGGTTCATACATGAAGAGACAATGTTCTGCTACGTCAAACACATTGTGTAAACATTGCCCACGTGGAACTTATACAGACAAATATGGGATGAACACGGCATGTAAGCCTTGTAGGACGTGTAAATATAATGAAGACATTCTCCGACCTTGTACACGTAGTAACGACAACATATGTGGCGACTGTACCAAAGGATTTTTTAGACTTATAGCATCAGGGGATTGCGGGAGATGTTCCGAATGTTATGGAGACTTTCCGGGATATACATTTGAAATCCCCGAGTGTATCCGTCGAAGCAATGGTAGTGACAAAGTGTGTATGCCTGTTTCAAGTCCACCATATAATTTCAACGATACAGAGGATGTTCAAATAAAAGTACTCGATACAGAATATTCAAGACAAAATACGGGATTATCACCACTTTATATTATTGTAATTGGTGGAGTCTGTGCCATATTACTATTCGCAACCACCACAATTATAATAATTTGCCGGATTCATCGCATAAAAATGAAGAAGATAGACCGATCATACAACAGTTCTTCCAGCAAACGAAACAGTGAAATATACACAGAGAACTGGGTGAATCATGAATACAAGAATACTTTAGTTTCCATGCGATCCAACAGCGTACCATTTGCTATTTCCGGTTCCGATTCAAAATATAACCTGGAATCACGTGGTCGTTCAAATACATTTTCCAATAAGACTGATTTAGAGTATTTTTTTGATGATTCTAGTGGAATGTTTACAAAAATGCAGGACAGGTGGGATGATGATTCTTGTTCAACTCACTTGGATTTTCCGAAAGAAGTCAAAGAGTCGCCATCTGGTGGACCATTACACAATATATTCATTCTATAATACTGGCGTACAAACTTATGGGTAAATAATGTATGTTAGTTTGTTTATCAAAATGTAGTTAATATCTAGAACGCAGTGTCTTATCATTTTGTAAACTCTGTAGTTGAAATTAACCTCTTAACGTTAGGTTAACATTTCGTCTCGTAACTAAATCTCAGAGAGAGAGGCTGTATGTGTAAAGTAGTTGTCAAAATAGCACCTTTAGTTTAAGCATGTTTTATTAATTAATTCGACGTAACATTACAATATTCAACTATATAGGATACATAATACAGAGTAATTAATAGGATTGGGAAACAAGTTGCTAGAATTTATATTAATGATCCCTAACCGTAGGAATAAAGTTCATTTATAATATAATATAAATCTCTAAGGGGAGAAACATATAGAACTATCTAATAATATGTTGATATAAATTACAGAAGGTTTAATTAGATAAAACGAATAAACGGATCCTGGTTTTTGGTGTAAAAATGTTTGATGCAAAGTAATTTAAAGAAGAAGAAAAAGAAGAAAGAAATAAGGGAACTAGGTACTTCTGATGTCACCTTTACCACCACGGAATGGCAATATGCACGCCTGACTAAATATTATACGTATGCTGTGAAATAAAAAAAATATATTGACTTTATTTGTGTAACGGCTTGGGGTTATGATTATCGTGCTTAGCACCATTTTCAAAAATGTTTCAGTTGTATCGTGGTGGTCAGTTTTATTTGTGGAGGAAACCGGATTGCCCGGAGAATACCATCGATTTGACGATGGTATCGTGAGAGAAAATTCTCCTTCAGAAGTAATATACCGACTGACCAAACTAACTATAACCTCCGCAAATTGTTCATTCAATGAAGCCATTCTATAAACGATAGAGAAAACAGAAATGACAGCTAAGAATTGACAATCCAGAGAAACTGACAACATTGGGCACAAAAGACACAGAACGAAGACAAACAAAACGAAAAAGAAAAACGAAAAAACTATTGAGCATGAAAAATCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR052302	Family	Neurotrophin receptor-related death domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46605	TUMOR NECROSIS FACTOR RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005035	Molecular Function	death receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007266	Biological Process	Rho protein signal transduction	Interproscan
GO:0009986	Cellular Component	cell surface	Interproscan
GO:0015026	Molecular Function	coreceptor activity	Interproscan
GO:0048406	Molecular Function	nerve growth factor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02583	NGFR, CD271; nerve growth factor receptor (TNFR superfamily member 16)	-	Ras signaling pathway	ko04014	PMID: 28812709
			Rap1 signaling pathway	ko04015	PMID: 28812709
			PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			Cytokine-cytokine receptor interaction	ko04060	PMID: 28812709
			Apoptosis - multiple species	ko04215	PMID: 28812709
			Neurotrophin signaling pathway	ko04722	PMID: 28812709
			Transcriptional misregulation in cancers	ko05202	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_4125-0.3 global RNA-seq network