Gene detail

Detailed information of Bpl_scaf_41172-1.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41172-1.9	UBIQUITIN-PROTEIN LIGASE E3C	Bpl_scaf_41172	122224	173475	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_41172-1.9

ATGTTTAGTAAGGTTGATGCACAGAAGAAAAATAATTTTTTAGAACAAACAAAGGCAGCCAGAGATGATAGAGCTCAAGAAAAAACACGACATGGTGCTGTCATAAAAATACAGGCTGTTGTTCGGGGATTTCTAGCAAGACAAAGACTAAAAAGAACAATAAAGAATGAAATAACAGATCTGTTGCAACGTCCTACATCAGAAGATGGAGATTATAAACCAAAGCTTAAGTCAGAACAAGATGACAAAGAGGTATGTTACATAGCTGTGGCCTTGAAAAAAGAATTTGTGTTGTCATGGATACAACAAGTTAAAGATATTAACTGGAAATGCTGTTGTTACCTGAAAGATATAAAGCCTGAGAACCACACAGATTTTAACACAATGATGTTATTATTAAGAGTTCTCATAGTATTTACTAGTACATCAACGTGGAAGATTGTCAAGGCCACGCCAGCACTGGCACCAGGATTGAACCAGTTGTGTAACAACATCATGGGAGATCTGAACACCAGAGGACTTTATCCTATTTTACAGAATTTGTTGACAAGAGGGTTATCTAGAACAAAATGTGCTTTTAACCAAACCTCACTGTCAGCAGTTGTAACTATTGCACTAAGACCTTTGGTAGCTGCTAACTTCTCAGACAACCTGTTGACGGTGTTCGTCTTACATATAATGGCAGTACCAGCTATAATAAACCATGTCTCTACTTTATCTCCAGAATGTCTTACACTACTAGTAACTAACAGAATATTTAAAAGATCTCTAGATGTCTTATCAAATGAACAAAGTACCAGAATTATTTTTAACACATTGGAGGGAAATTATGCTCTATGTTTACTGGCAAACATGGTACAGCTAGGATTTGTTGAGCTTGAGGGTCTTGTTGAAAATACTTCAAAATTTATGACTGTTGTAATAAGGCTGCTGGACAGCTGTAAGCAGTACGTACAGAACAAAAGATCAAATTTAACACATTGGCATCCTGTTCTGGGCTGGTTCTCCCAGAAAACAGATCAAAGTTTACATGCCTCGATGTCATTTGTTGTTAAACAGCTACAGTTACTATGGAGTGAGAAGATGATACGACTCATGTTTGCAGATCTACTTAGTTATGTAGAAATTGATGCAGAGAAAGCAAATAAAAACCCATCACCATCTAGAAATATTATTAAGAAGGCATTAGACAAAGCTTCAACAAAGTCGTCCAGTTCTAAGATAAAATTAGACAGTTCAATAGGAACAGCAACTTGTCTGCCATGTGTTCTGTATCAGAGAACTCTTAACACATTGTCACAACTCAGATTTGATATTCTTGGAGGGTTGAGTTATAATGATGTGTTACTTCCTATCCTATGGAAGTTTTTAGTGGACCTAGGACCTAACTGTGGACTCAAGAGTTTTTTGGAGTTATTGAGTCAGGCTCCTAACAGTACTATACATCCTGTGTTTAGTCTACTTACAATATTTTGTGATGCGGCCAGTCATTTTATCATAACTTTAGATGACATGGAAATGTATGAAAAAGAGAGATTATTCAGACTTCAGGATTATGTAAAGATTAGTGAATTTCTTAATTCTTTTGTGTTTCGTGTTATCTGGAATAATCTGATTGACACAACAACAGCAGTTACAAGTGAAGTATTTGGAGCTACAAGAGGGTTGTTGATGATTCTATATGAAAGAGACTGCAGGAGGAGATATGCTCCACAAAATCATTGGCTAATTAGAGATATAAAGCCATCAGTATTTATAGCAGAGTTAGAAAAGGGGAAGAAACCTGCTGTTTTCTTGATGCAGAGATTACCACATATTATTCCATTCTCTGAGAGAGTAAAATTATTTAGAAGAAATGTTGCTAAAGAAAAAGAAGCCATGGGACTAACAGAATCAGCCTGTACTTCTCCCCAATCCACATTGATATCTGTACACAGATCTAGAATTGTAGAGGACGGGTACAGACAGTTAGCACAGTTACCACCCAAGTCCATGAAAGGTCTCATCAGAGTCAAATTTATTAATGAACAGGGTTTAGATGAAGCTGGTATAGATCAGGATGGAGTTTTTAAAGAATTTTTAGAAGAAACTATTGCCAGAGTATTTGATCCATCTCTAAATCTGTTTAAGGTGACATCAGAACAGAAACTTTATCCTTCTTCTACCTCCTACATTCAGGAGAACCACCTGCTATTGTTTGAATTTGTGGGTAAAATGTTGGGGAAAGCTGTGTATGAGGGTATAGTAGTTGAAGTACCTTTTGCACCATTTTTCCTGACTCATATGTTGGGTCATCAACAGAGTGCCACCTACAGTTCATTAGATGAACTACCATCACTTGATCCAGAACTTGCCAAAAATCTCTCATATACTAAGCATTTTGAAGGTGATGTTGATGATCTTGGTTTGACCTTTTCTTTGGATGAAGATATCATGGGAAGAGTAGAAACACATGAACTGGTTCCTGGTGGAAAGGCAATACCAGTCACAGATGAAAATAAGATAAGATACGTACATCTGATGGCCCACTTCAGAATGTACAAGCAAATAAAAGATCAGACCCAGGCATTTATTAGAGGATTTAAAGGTGTAATTAACGTTGACTGGTTGTTAATGTTTTCTGCCCCAGAATTACAGAAACTGATATCGGGCGATAATGCTGACCTAGATATACAAGATTTAAGGAGAAATACTCAATATTATGGTGGTTACCATAACAACCATAAAGTAATAAATTGGATGTGGGACATATTAGATAAAGATTTCACAAGAGATGAGAAAGGATTGTTTTTAAAGTTTGTGACCAGTTGTTCCAAAGCTCCTCTTCTGGGATTTTCTAACTTAGAACCTCCGTTTTCTGTGAGATGTGTTGAAGTCAGTGATGATCAG

Transcript

Bpl_scaf_41172-1.9

AATTATATAAAAACAAAACATTAAAATGTCAAGAAGCAGATTGAAATAAGAATGTTTAGTAAGGTTGATGCACAGAAGAAAAATAATTTTTTAGAACAAACAAAGGCAGCCAGAGATGATAGAGCTCAAGAAAAAACACGACATGGTGCTGTCATAAAAATACAGGCTGTTGTTCGGGGATTTCTAGCAAGACAAAGACTAAAAAGAACAATAAAGAATGAAATAACAGATCTGTTGCAACGTCCTACATCAGAAGATGGAGATTATAAACCAAAGCTTAAGTCAGAACAAGATGACAAAGAGGTATGTTACATAGCTGTGGCCTTGAAAAAAGAATTTGTGTTGTCATGGATACAACAAGTTAAAGATATTAACTGGAAATGCTGTTGTTACCTGAAAGATATAAAGCCTGAGAACCACACAGATTTTAACACAATGATGTTATTATTAAGAGTTCTCATAGTATTTACTAGTACATCAACGTGGAAGATTGTCAAGGCCACGCCAGCACTGGCACCAGGATTGAACCAGTTGTGTAACAACATCATGGGAGATCTGAACACCAGAGGACTTTATCCTATTTTACAGAATTTGTTGACAAGAGGGTTATCTAGAACAAAATGTGCTTTTAACCAAACCTCACTGTCAGCAGTTGTAACTATTGCACTAAGACCTTTGGTAGCTGCTAACTTCTCAGACAACCTGTTGACGGTGTTCGTCTTACATATAATGGCAGTACCAGCTATAATAAACCATGTCTCTACTTTATCTCCAGAATGTCTTACACTACTAGTAACTAACAGAATATTTAAAAGATCTCTAGATGTCTTATCAAATGAACAAAGTACCAGAATTATTTTTAACACATTGGAGGGAAATTATGCTCTATGTTTACTGGCAAACATGGTACAGCTAGGATTTGTTGAGCTTGAGGGTCTTGTTGAAAATACTTCAAAATTTATGACTGTTGTAATAAGGCTGCTGGACAGCTGTAAGCAGTACGTACAGAACAAAAGATCAAATTTAACACATTGGCATCCTGTTCTGGGCTGGTTCTCCCAGAAAACAGATCAAAGTTTACATGCCTCGATGTCATTTGTTGTTAAACAGCTACAGTTACTATGGAGTGAGAAGATGATACGACTCATGTTTGCAGATCTACTTAGTTATGTAGAAATTGATGCAGAGAAAGCAAATAAAAACCCATCACCATCTAGAAATATTATTAAGAAGGCATTAGACAAAGCTTCAACAAAGTCGTCCAGTTCTAAGATAAAATTAGACAGTTCAATAGGAACAGCAACTTGTCTGCCATGTGTTCTGTATCAGAGAACTCTTAACACATTGTCACAACTCAGATTTGATATTCTTGGAGGGTTGAGTTATAATGATGTGTTACTTCCTATCCTATGGAAGTTTTTAGTGGACCTAGGACCTAACTGTGGACTCAAGAGTTTTTTGGAGTTATTGAGTCAGGCTCCTAACAGTACTATACATCCTGTGTTTAGTCTACTTACAATATTTTGTGATGCGGCCAGTCATTTTATCATAACTTTAGATGACATGGAAATGTATGAAAAAGAGAGATTATTCAGACTTCAGGATTATGTAAAGATTAGTGAATTTCTTAATTCTTTTGTGTTTCGTGTTATCTGGAATAATCTGATTGACACAACAACAGCAGTTACAAGTGAAGTATTTGGAGCTACAAGAGGGTTGTTGATGATTCTATATGAAAGAGACTGCAGGAGGAGATATGCTCCACAAAATCATTGGCTAATTAGAGATATAAAGCCATCAGTATTTATAGCAGAGTTAGAAAAGGGGAAGAAACCTGCTGTTTTCTTGATGCAGAGATTACCACATATTATTCCATTCTCTGAGAGAGTAAAATTATTTAGAAGAAATGTTGCTAAAGAAAAAGAAGCCATGGGACTAACAGAATCAGCCTGTACTTCTCCCCAATCCACATTGATATCTGTACACAGATCTAGAATTGTAGAGGACGGGTACAGACAGTTAGCACAGTTACCACCCAAGTCCATGAAAGGTCTCATCAGAGTCAAATTTATTAATGAACAGGGTTTAGATGAAGCTGGTATAGATCAGGATGGAGTTTTTAAAGAATTTTTAGAAGAAACTATTGCCAGAGTATTTGATCCATCTCTAAATCTGTTTAAGGTGACATCAGAACAGAAACTTTATCCTTCTTCTACCTCCTACATTCAGGAGAACCACCTGCTATTGTTTGAATTTGTGGGTAAAATGTTGGGGAAAGCTGTGTATGAGGGTATAGTAGTTGAAGTACCTTTTGCACCATTTTTCCTGACTCATATGTTGGGTCATCAACAGAGTGCCACCTACAGTTCATTAGATGAACTACCATCACTTGATCCAGAACTTGCCAAAAATCTCTCATATACTAAGCATTTTGAAGGTGATGTTGATGATCTTGGTTTGACCTTTTCTTTGGATGAAGATATCATGGGAAGAGTAGAAACACATGAACTGGTTCCTGGTGGAAAGGCAATACCAGTCACAGATGAAAATAAGATAAGATACGTACATCTGATGGCCCACTTCAGAATGTACAAGCAAATAAAAGATCAGACCCAGGCATTTATTAGAGGATTTAAAGGTGTAATTAACGTTGACTGGTTGTTAATGTTTTCTGCCCCAGAATTACAGAAACTGATATCGGGCGATAATGCTGACCTAGATATACAAGATTTAAGGAGAAATACTCAATATTATGGTGGTTACCATAACAACCATAAAGTAATAAATTGGATGTGGGACATATTAGATAAAGATTTCACAAGAGATGAGAAAGGATTGTTTTTAAAGTTTGTGACCAGTTGTTCCAAAGCTCCTCTTCTGGGATTTTCTAACTTAGAACCTCCGTTTTCTGTGAGATGTGTTGAAGTCAGTGATGATCAG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00612	IQ	IQ calmodulin-binding motif	Motif	Interproscan
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR000569	Domain	HECT domain	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR044611	Family	Ubiquitin-protein ligase E3A/B/C-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45700	UBIQUITIN-PROTEIN LIGASE E3C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10588	UBE3B; ubiquitin-protein ligase E3 B	EC:2.3.2.26	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41172-1.9 global RNA-seq network