Gene detail

Detailed information of Bpl_scaf_4116-5.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_4116-5.8	AP COMPLEX SUBUNIT MU	Bpl_scaf_4116	519330	552488	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_4116-5.8

AATCAACTTCCCGTTAGGTGTCAGATTTTTCTACATCATCTGATCAAAATGATACACAGTTTGTTCATAATTAATAATAGCGGAGATGTTTTTATGGAGAAACATTGGAAAAGTGTGATTCATAAATCAATATGTGACTATTTCTTTGAAGTACAAAGCAAAGCTGTATCCGCTGATGATGTTCCTCCTGTCATCCCTACACCTCACCATTATCTTATAAACATATACAGGAACCAGCTTTATTTTGTTGCTGTGGTAACAACAGAAGTGCCACCAACTTTTGTTGTTGAGTTTTTACACAGAATCTGTGACACACTTGAGGATTATTTCAATGACTGCTCAGAATCTACGTTGAAAGAACATTATGTCATTGTTTACGAGTTGCTGGATGAGATGTTAGATAATGGTTTTCCATTGGCCGTGGAATCTAACATACTGAAGGAATTAATTAAACCACCTAATCTATTAAGAACGATAGCAGATACAGTCACTGGAAAAAACACAGGGGTCAGCGGCACTCTACCAACAGGACAACTGTCTAACGTTCCATGGAGAAGAACTGGTGTAAAGTACGCTAATAATGAAGCCTATTTTGATGTTATAGAAGAAATAGATTGTATTCTTGACAAATCTGGGTCCACTGTTATAGCAGAGATACAGGGCTATATCGATTCCATGATCAAGTTAAGTGGTATGCCGGACCTAACCTTGTCGTTCATCAATCCTCGTTTATTAGACGATGTCAGTTTTCATCCTTGCATTAGATACAAAAGATGGGAGAGTGATAAAGTATTGTCATTTGTGCCACCAGACGGGAATTTTAGACTTATATCATATCATATAGGATCTAACAACATGGTAGCCATTCCTGTCTACGTCAAACACAGTATTATGTACAGAGAGGGTAGCTCTGGTAGATTTGATGTAACAATTGGTCCAAAACAGAACATGGGCAAAACTATTGAAAATTTAATGATGGAAGTACCATTCCCTAAAACAGTTTTAAACGTGACCTTGACACCATCACAGGGGAAGTATACATTTGACCCTGTGTCAAAGGTCATGTCTTGGGATGTTGGAAGAATTGATACAACAAAACTGCCAAATATTAAAGGAAATATAAGTTTACAGACAGGATCATCTATACCAGAGAGTAACCCAACATTGAATTTACATTTTACTATAAGTCAGCTAGCTATCTCTGGTGTTAAAGTCAACAGGTTAGATATGTACGGTGAGAAATACAAGCCATTTAAAGGTGTTAAGTATGTTACCAAAGCAGGAAAGTTCCAGATCAGGACTTAAAGGAAAGTTCCAGATCAGGACTGAAACACAATGTTGTATGAACAAAACTGTGCAATATACAAAAAAAAACTTGGATGTTATTTACAAATATTAAATTGAACAATTTAAGACATGTTTATCAGTGTATGTCTTTTTTATGTTTTTTCTTTTTAAAGATGGTTTACTTTTCAAATTATATGCTGTATATATGTCAGTTGTGAGTTCAAACCCCTTTCATGGCCAGGTGTACTTGATACAACATTATGTGATAGTTTGTGTAGTGACTTGCGACAGGTCGGTGGTTTTCTCCGGGTACTCCGATTTCCTCCACTAATAAAACTGATTGCCACGATATTTAATACTGAAATACTGTTGAAAGTGGCATTAAACACCATAAACCAAGCAAACCAAACCATGTCTTTTTACCATTTCAATTTACATGCTGTATATATGCCAGTTGTGAGTTCGAACCCCGTTCATGGCAAGGTGTACTCGATACAACATTATGTGATAAAGTGACTTGCAGCAGGTCAGTGATTTTCTCCGGGTACTCTGGTTTCCTCCACCAATAAAATGACCTTGATGATATAACTGAAATACTGTTGAAAGTGGCGTTAAACACCATAAACCAAACCTAAACCAAACCATATCTTTTGTGTTTTTTTTAAAGATGGTTTATCATTTCAAATTATCTGCTGTATGCCTGCTAATAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00928	Adap_comp_sub	Adaptor complexes medium subunit family	Family	Interproscan
PF01217	Clat_adaptor_s	Clathrin adaptor complex small chain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001392	Family	Clathrin adaptor, mu subunit	Interproscan
IPR011012	Homologous_superfamily	Longin-like domain superfamily	Interproscan
IPR018240	Conserved_site	Clathrin adaptor, mu subunit, conserved site	Interproscan
IPR022775	Domain	AP complex, mu/sigma subunit	Interproscan
IPR028565	Domain	Mu homology domain	Interproscan
IPR036168	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR050431	Family	Adaptor complexes medium subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10529	AP COMPLEX SUBUNIT MU	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0006897	Biological Process	endocytosis	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131	Cellular Component	clathrin adaptor complex	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12398	AP3M; AP-3 complex subunit mu	-	Lysosome	ko04142	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_4116-5.8 global RNA-seq network