Gene detail

Detailed information of Bpl_scaf_4116-1.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_4116-1.7	ANAPHASE-PROMOTING COMPLEX SUBUNIT 2	Bpl_scaf_4116	97720	123002	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_4116-1.7

AATTCACAACCATATATCAGTACAGAAGTTGAGTTTCAAAATGCAGTGGAAATATTGTGCAAACAGGATCTTGGTCACATTATTGAAGAATGGTTCCTGGAAACTTTACAGGAAGACCTACGTCAGAGGGTTGGACCACATTTCTGGGACTTCTTTACAGGAGAGCAAAGCAAACCAGTTCAACTCATGGAAGCTGTTGAATATTTGCATAAAGTGACAATGGATTATCTCCCTTGTATTCATAGACTAGAATCCACAACACAGATAAAGCGTTGGAGAAAATCATCAACATTATTCAATACATCCTCTTTAACAGAAGCATTTATTTTATTGATGAAAGCAACTCTTTTCTCTTTATTTCCTAAAGCTTTCCAGGAAATTGTCAACAAGTTTTATTCTGATGCATTTAAAGTATTTCATCACACAACAACAGACACAGAACAAGATAATGATGAAGATGAAGAGACCAGTTGTAAAGGATGTGATCAGGTTACAGAAGCCTGTCTATGTCAACATATCATGTCCAACTTTCACACCCTTAACAGAAAATTAGATGATATTGGAATTTTAGAAAGAGTATCAGGGACAGCCATCACTAATATTGTACACGAGAGAATAAAAACTTACGTAGAGAACTCGTGTAAAGGAAACTTTGAAACATCTTATATTGAGATATTAGAAACGTGGTTAGATACGAAAGTTCTTGGTTGGCTACATTTGGTGTATTCAGGAAACAGAACTCACATCTATTCAGACTGTATTGACGGGTTTAAAGGGAGATTACATCATTTCTTGTACGAGACGTATGCTAATATTCAGATAGAACAACTGTTCAACATTATAATAGACTTTCCTGAATCAGAACCTGCTATCTTAGATCTCAAATTATGTTTAGAGAAGACGGATCTAAGGACACAACTTGTTATGTCATTAAAGTCAGCATTAGAGACACGACTTTTACATCCAGGTGTAAATACATCAGATATTTTAACAGCCTACATTGCTGCTATCAGAGCTCTGAGGGTACTTGATCCTGCTGGAGTTATATTAGAACTGGTTTGTCATCCTGTCAGGAAATATCTCAGGTCAAGAGATGACACAGTTAGATGTATTGTATCTAATTTAACTGATGATGGCAGTAATGAACTTTTAGATGAATTGATAAAAGGACAGCCATTGTTATTAGATGAGTCTGGACATAGTGATAATGAGGATGAAGACTGGGAGAAATGGATGCCAGACCCAGTAGATGCTGATCCGTCAACTACATCCAAGAGTAGACGAGCCTCAGACATTATTAGTATGCTAGTCAACATATATGGTAGTAAAGAATTGTTTGTCAATGAGTACAGGACGTTGTTAGCTGACAGAATATTGACTCAGTTTAACTATGAGATTGAGAAGGAAATACGATACTTAGAGCTTTTAAAGCTGAGGTTTGGTGAGACACAACTTCACTACTGTGAAGTGATGTTAAAAGATGTGGCTGACTCTAAAAGACTGAACGCCAGAGTTACAGATGCCAGAAATAAAACTGGTGAACGAGGGGAGATAGATGTTAATGCTATGGTGTTGTCAGCACAGTTTTGGCCGGCCTTTAGGGAAGAGAAGATAACTCTACCTGAGATGATGCAGGAATCATTAAAGGAATATACAAAAAAATTTGAAGCTTTGAAGGGAAACAGAACTTTAAACTGGAAACCTCATTTAGGCTTGGTCAATATAGATGTAGAACTGAAAGACCGTACTCTGAATTTTAATGTTTCGCCAGTCCATGCAGCCATTATCATGCAGTTCCAGAAACAAGAAAAATGGACGGTAGAAGATTTAAGTAATGAACTACAAATGCCAGCCACAGCATTGAGGAGGAAAATAGCATACTGGCAAACCCAGGGGCTCCTGAAGGAAGAAACAACAGACACATTTCTATTGGTTGAGGAACATAAAGGTCGTACACATGATATTATTGTCCCTGATGATGATGAGGCAGAGTCTGCCATGGCCTCGGCTCAATCACAGAGGGAAGAAGAACTTCAGGTTTTCTGGTCCTATATTGTTGGAATGTTAACCAATCTAGAAAGTCTACCATTAGAAAGAATTCATACAATGTTAAGAATGTTTGCCATGCAAGGACCTACTACTATGGAGTGTAGTACACAGGAATTAAAAGGATTTCTGGACCGTAAAGTTAAAGAACAAAAATTGTTATATTCAACAGGAGTTTATAGACTACCAAAATCTAATTAA

Transcript

Bpl_scaf_4116-1.7

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|Cullin

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00888	Cullin	Cullin family	Repeat	Interproscan
PF08672	ANAPC2	Anaphase promoting complex (APC) subunit 2	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001373	Domain	Cullin, N-terminal	Interproscan
IPR014786	Domain	Anaphase-promoting complex subunit 2, C-terminal	Interproscan
IPR016158	Domain	Cullin homology domain	Interproscan
IPR036317	Homologous_superfamily	Cullin homology domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR044554	Family	Anaphase-promoting complex subunit 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45957	ANAPHASE-PROMOTING COMPLEX SUBUNIT 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005680	Cellular Component	anaphase-promoting complex	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0007091	Biological Process	metaphase/anaphase transition of mitotic cell cycle	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0070979	Biological Process	protein K11-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03349	APC2; anaphase-promoting complex subunit 2	-	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709
			Cell cycle	ko04110	PMID: 28812709
			Cell cycle - yeast	ko04111	PMID: 28812709
			Meiosis - yeast	ko04113	PMID: 28812709
			Oocyte meiosis	ko04114	PMID: 28812709
			Progesterone-mediated oocyte maturation	ko04914	PMID: 28812709
			HTLV-I infection	ko05166	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_4116-1.7 global RNA-seq network