Gene detail

Detailed information of Bpl_scaf_41129-0.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41129-0.5	ATP-BINDING TRANSPORT PROTEIN-RELATED	Bpl_scaf_41129	29833	65314	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_41129-0.5

ATGCCAAAGAAAGACAAAAGAAACAAAGGAAAAGGTGACATTGATGACGAGGAAAAGGATTCAAAATTAGAGGAACAAATGGCCGGTCTCATGAATGAGAATACCGGGTCCTCCGACGCAAAACCCAAGAAGAAAGAAAAGGGAAAATCTTCTAAGTTAAAGAAGCTGGCAGAATTAATGGCTTTAGAAGATGACAATGGTGATGATGGGGAAGATAAAGAAGAAGAGCCTGAGATACAGTTTGTTGCTGTAAAAAAGAAAGAGGTACCAGTTTTAAAGGACAGGGAGTCTCCTGTAGAGGTTGATAGAGATGGTGCATTCCTGAGGGCTCAGGAGAAGGAGGAGGAAAATGGCTTAGAGGATGAAGAAAAGGTCAAAGATGTTGAAAAAAAATTGAGCAAAAAGGAATTGAAGAAATTGAAAAAGAGGATGGAATATGAGAAACAATTGGAAAGTTTGGATCCAGAGTCTACTGCTAATTTCTCAGTGTCACAAGCTGAAAAGTCATCTAAGGCAGCTATTCTGGAAAATCAACTTGATATAAAAGTAGAAAACTTTTCAATATCAGCGAGAGGGAAAGAATTATTCGTTAATGCCAACCTGTATATAACAGCCGGCAGACGGTATGGTTTGGTTGGACCAAATGGTCATGGAAAGACAACTCTGTTGAGACACATGGCAAACAGAGCATTAAACATACCAGCTAATATTGATGTCTTATATTGTGAACAAGAGGTGTCAGCTGATGACACTAAAGCTATTGATGCTGTATTGAAAGCTGATAAGAAGAGAACAGCTCTATTAGAGGAAGAGAAAGCACTATCAGTAGAAGTAGAAAAGGGAAATACTAAAATCAATGAAAGATTACGAGAGGTATATGATGAATTGAGTGCTATTGGAGCAGATTCAGCAGAATCAAAAGCCAGGAGAATTCTAGCTGGTTTAGGGTTCACCATTCCTATGATGGAACGTCCCACAAAAAGTTTGTCTGGAGGATGGAGAATGAGAGTGTCATTAGCAAGAGCTTTGTTCATGGAGCCTACCTTACTGATGTTAGATGAACCTACAAATCATTTAGATCTAAACGCTGTCATCTGGCTTGACAACTACTTACAAGCATGGAAGAAAACATTACTGATTGTCTCCCATGACCAGAGTTTCCTTGACAACGTTTGTTCAGATATTATACATCTAGATCAGCAAAAACTCTTCTATTACAGAGGAAATTATGCAATTTTTAAGAAAATGTTGGTTCAAAAGAGAAAAGAACAATTAAAAGCCTATGAAAAGCAGGAAAAAATGTTGAGAGAAATGAAACAATCTGGAAAATCTACAAAACAAGCAGAAACTAAACAGAAGGAAGCTTTAACCAGGAAACAACAGAAAAATAAATCTAAACAGCAGGCAGCGGAGGAGGAGAAAGGGCCACAGGAACTGTTACCAAGACCTAAAGATTATATTGTTAAATTTGACTTTCCAAATCCAGCACCACTCAATCCACCTGTATTAGGATTAATGGATGTAGATTTCTCATATGATGGAAAAGACTTTTTATTCAAGAAATTAAATTTTGGCATAGACATGCAATCCAGAATTGCTATAGTTGGACCTAATGGTGTTGGTAAAAGTACATTATTAAAGCTGTTGACAGGAGATCTGGAACCAACAACAGGAGAAATGAGAAAGAATCACAGATTGAGAATAGGAAAATACAACCAGCATTCAGGGGACCAGTTAAATCTAGACGAATCACCAGTGGAATATCTACAGAGATTATTTAATATCCAGTATCAAGATGCAAGAAAAATGTTGGGACGATTTGGTCTAGCGAGCCACGGTCATACAATCAAGATTAGAGATCTCTCTGGTGGCCAGAAAGCAAGAGTAGCTTTGGCAGATTTACGAAGTCGACAACCAGATGTTCTTATCTTGGATGAACCAACAAATAATTTAGATATTGAGTCAAATGATGCTCTTGCTGACGCAATTAATGCTTTTCAAGGAGACTGTCAATTGTGGGTCGTTGAAGAACAGACAATTAATGAAATTGAAGGAGATTTTGATGATTATAGACGGGAGCTGTTATTGGCACTTGGAGAGGAAATTCATATACCACAACCTCAAGAGGTTGAAACTACGAACTTATCTTAA

Transcript

Bpl_scaf_41129-0.5

CCACATGCTACTTCCGGTAAATATTATTGAGCAATCTGGAAAAAACGTGTGAAAAAAAAAACAATTTCCATTATAACATACAAAAATATAAAGAATGCCAAAGAAAGACAAAAGAAACAAAGGAAAAGGTGACATTGATGACGAGGAAAAGGATTCAAAATTAGAGGAACAAATGGCCGGTCTCATGAATGAGAATACCGGGTCCTCCGACGCAAAACCCAAGAAGAAAGAAAAGGGAAAATCTTCTAAGTTAAAGAAGCTGGCAGAATTAATGGCTTTAGAAGATGACAATGGTGATGATGGGGAAGATAAAGAAGAAGAGCCTGAGATACAGTTTGTTGCTGTAAAAAAGAAAGAGGTACCAGTTTTAAAGGACAGGGAGTCTCCTGTAGAGGTTGATAGAGATGGTGCATTCCTGAGGGCTCAGGAGAAGGAGGAGGAAAATGGCTTAGAGGATGAAGAAAAGGTCAAAGATGTTGAAAAAAAATTGAGCAAAAAGGAATTGAAGAAATTGAAAAAGAGGATGGAATATGAGAAACAATTGGAAAGTTTGGATCCAGAGTCTACTGCTAATTTCTCAGTGTCACAAGCTGAAAAGTCATCTAAGGCAGCTATTCTGGAAAATCAACTTGATATAAAAGTAGAAAACTTTTCAATATCAGCGAGAGGGAAAGAATTATTCGTTAATGCCAACCTGTATATAACAGCCGGCAGACGGTATGGTTTGGTTGGACCAAATGGTCATGGAAAGACAACTCTGTTGAGACACATGGCAAACAGAGCATTAAACATACCAGCTAATATTGATGTCTTATATTGTGAACAAGAGGTGTCAGCTGATGACACTAAAGCTATTGATGCTGTATTGAAAGCTGATAAGAAGAGAACAGCTCTATTAGAGGAAGAGAAAGCACTATCAGTAGAAGTAGAAAAGGGAAATACTAAAATCAATGAAAGATTACGAGAGGTATATGATGAATTGAGTGCTATTGGAGCAGATTCAGCAGAATCAAAAGCCAGGAGAATTCTAGCTGGTTTAGGGTTCACCATTCCTATGATGGAACGTCCCACAAAAAGTTTGTCTGGAGGATGGAGAATGAGAGTGTCATTAGCAAGAGCTTTGTTCATGGAGCCTACCTTACTGATGTTAGATGAACCTACAAATCATTTAGATCTAAACGCTGTCATCTGGCTTGACAACTACTTACAAGCATGGAAGAAAACATTACTGATTGTCTCCCATGACCAGAGTTTCCTTGACAACGTTTGTTCAGATATTATACATCTAGATCAGCAAAAACTCTTCTATTACAGAGGAAATTATGCAATTTTTAAGAAAATGTTGGTTCAAAAGAGAAAAGAACAATTAAAAGCCTATGAAAAGCAGGAAAAAATGTTGAGAGAAATGAAACAATCTGGAAAATCTACAAAACAAGCAGAAACTAAACAGAAGGAAGCTTTAACCAGGAAACAACAGAAAAATAAATCTAAACAGCAGGCAGCGGAGGAGGAGAAAGGGCCACAGGAACTGTTACCAAGACCTAAAGATTATATTGTTAAATTTGACTTTCCAAATCCAGCACCACTCAATCCACCTGTATTAGGATTAATGGATGTAGATTTCTCATATGATGGAAAAGACTTTTTATTCAAGAAATTAAATTTTGGCATAGACATGCAATCCAGAATTGCTATAGTTGGACCTAATGGTGTTGGTAAAAGTACATTATTAAAGCTGTTGACAGGAGATCTGGAACCAACAACAGGAGAAATGAGAAAGAATCACAGATTGAGAATAGGAAAATACAACCAGCATTCAGGGGACCAGTTAAATCTAGACGAATCACCAGTGGAATATCTACAGAGATTATTTAATATCCAGTATCAAGATGCAAGAAAAATGTTGGGACGATTTGGTCTAGCGAGCCACGGTCATACAATCAAGATTAGAGATCTCTCTGGTGGCCAGAAAGCAAGAGTAGCTTTGGCAGATTTACGAAGTCGACAACCAGATGTTCTTATCTTGGATGAACCAACAAATAATTTAGATATTGAGTCAAATGATGCTCTTGCTGACGCAATTAATGCTTTTCAAGGAGACTGTCAATTGTGGGTCGTTGAAGAACAGACAATTAATGAAATTGAAGGAGATTTTGATGATTATAGACGGGAGCTGTTATTGGCACTTGGAGAGGAAATTCATATACCACAACCTCAAGAGGTTGAAACTACGAACTTATCTTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050611	Family	ATP-binding cassette sub-family F member, EF3 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06184	ABCF1; ATP-binding cassette, subfamily F, member 1	-	Translation factors	ko03012	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41129-0.5 global RNA-seq network