Gene detail

Detailed information of Bpl_scaf_41063-7.16 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41063-7.16	ABC TRANSPORTER G FAMILY MEMBER 28	Bpl_scaf_41063	719533	739717	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_41063-7.16

CACACTAGTAGATTTTACAATGTAGAAATGTGAATTCAAAAATAGACAATGAAATCTATTATTGCAATTATTGGAAATGTCGGCTTCGCAATTTGATGATGTTAAGAATCGATCGCATTTCGTAGTCTTAGATTAGCCATATTGGCTATGTACAATCGATATCGTATAAATGTGTAAATTCACATGGCAGATATGTCTACACAAAGAAAAATTAAGGGGAGACAAGTTGAGGTTGTGATGGAAGAAAATGCCTGTTTCTATGATCTGACCTATTACCTGTATGGATGTTCTAATCAGTCTCCAGATGCGGACGAGGAGGAACGGCAAATAATTCCCACATTGAATTTGTTAAACGTTAGTTATGAAGTTACAGAGTACGTAGGACCATGGTGGAAAGGGGCATGTTTCAGACAAAAGCAAAAGAAAAAAGTGCTAAATGATATAAGTTGTCAATTTAGAAGTGGAGAGCTAACAGCAATATTGGGCAGTTCTGGTTCCGGAAAAACATCTCTTTTGGACATCATTTCCTCGAGATCTAATGGAAATGTTTATGGCAAAGTTTACTACAATAATTATATGTGTACAGCGGAAGTCATAAAACAGTATGCCGCTTACGTCATGCAGGCAGATCGTCTTTTACACAATTTAACAGTTCGAGAAACAATCCGTTATGCAGCATCTTTAAGGCTCCCAGGGATAATGAATGATACAGAGATTGATATAAAGGTTGAAAGAGTTATAGCAGACATGGGATTGAAACAAGTGGCTGACTCAAAGATTGGTGGATCTATAGTCCGTGGAATATCAGGTGGTGAAAGACGACGTGTGACGATAGCTATCCAGCTTCTGCAGGGCCCCAAAATTTTGCTCCTTGATGAACCAACAACAGGTCTTGACAGTTGTACAGCACGCCAGCTTGTTTCCAATTTATCTGAGATAGCACACGGAGGAAAAATTGTAATTTTGACAATACATCAACCTCGATCTGATGTATTCAAAATGTTCGACAAAATAGGACTTCTTAGTATGGGAGAGATTGTTTATTTTGGAAAATCAACACAAATGGTGGAATATTTCCAAGATGTTGGGTATCCTTGCCCGACATATGCCAATCCTCTGGACCATTACGTTGATCTTGCCAGTATTGACAGGAGAAATCAAGAACGAGAACTACAAACATTGTCAAAAGTTCAAAAACTGGTTGAAGCTTTTTCGAAATCCACTGTGTACGAAGATAATCTACGAAACATTGAGGAAGAAACAATGCGGCATACGACAAGAAGAACGATGGTATTCTTCTACAAGCCACAACCGCCAAGTATCTTCCGAATTTTAATGTGTCTTATTGGGCGAATGCTTGTTAATTTAAAAAGGGACAGGACTATATACATGTCACGTCTATTGATGCTTTCTTTGTTTGTACCATTTGTCTGTGCTTTCCTTGGTCACATGAAGACTGATCAGAAATCTATACAGGACAGGGTTGGTCTATTGTATCAGTCAGTGGGAGTACCGTCTTATGTAGGCATACTTATTGCTGTGGGATGTTTCCCGCCACTAAGAGATCTCTATTACAGAGAATGCAGAGATGGTCTATACTCAACTAGTACATTTTTGCTGTCGTATGCATTACATATTATACCATTCCAAGCTGCCTCGGCCTTGATATTCAGCATTATAGTTTATTGTTCATGGGGCAGGTTTGCTATATACTACGCTACTGTCTTTGTCCTACATTTTATTGGAGAGATTATGACGATTGGTGTAATGGGAGTATTTAGCAATCCACAAATGGCCAACAGCACTTCAGCATTAATTCAAGCAGCATCTGTACTTATTGCTACTGGGTTCATAAGATCTTTGCCCACCATGTTGGACATATTTCAATGGAGCAGTTGGCTAAGTGTAATGAAATACAGTGCAGAAATCCTTGTTGCCAATGAATTCCAGGAACTTAATTTTACATGCCCGATAGAACCCGGTGTTCCTTGCCAATATCCTACAGGAGAGAAATACTTAAATGACTTTTACCCAGATGCCGTGGAACACATGAGAAGGAACTTTTGGGCACTTGGGGGATTTATGGTGTCGTTTCTATTTTTTACCATTGTTGCTTTCAAAATTAGAGGAATTCCGAATTTACATTAACGAATGAGTCACATGTTAGTTGAATGTTGATTGAACAGTTTGTGCAATTATCTATTTTGCCATATATCCAACACAGATTAGAAGAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005	ABC_tran	ABC transporter	Domain	Interproscan
PF01061	ABC2_membrane	ABC-2 type transporter	Family	Interproscan
PF19055	ABC2_membrane_7	ABC-2 type transporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR013525	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR017871	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR043926	Domain	ABC transporter family G domain	Interproscan
IPR050352	Family	ATP-binding cassette subfamily G transporters	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48041	ABC TRANSPORTER G FAMILY MEMBER 28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043190	Cellular Component	ATP-binding cassette (ABC) transporter complex	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05683	ABCG5; ATP-binding cassette, subfamily G (WHITE), member 5 (sterolin 1)	-	ABC transporters	ko02010	PMID: 28812709
			Bile secretion	ko04976	PMID: 28812709
			Fat digestion and absorption	ko04975	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41063-7.16 global RNA-seq network