Gene detail

Detailed information of Bpl_scaf_41052-2.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_41052-2.9	CARNITINE O-ACYLTRANSFERASE	Bpl_scaf_41052	230360	273621	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_41052-2.9

ATGCATCAGGGTTGGTCTGGTGAGAAACCGCTACCTAAACTTCCGGTACCAGATCTTAAAAGAACACTAGAAAAGTATATTGAATTAATACAGCCAATTCTAACACCAGCACAGTACGCCAAAACTAAAGATGTCGTTAAAGAATTCGGAAAACCAGGGGGTGAAGGGGAAACATTACAAAATAAATTGAGAGAATATGCTGAAACAAAAGACAACTGGGCATATAACTGGTGGCTCGATGATATGTACATGAAACTTAGATTACCATTACCTATCAGCTCTAACCCAGGGATGGTGTTTCCAAAACAACATTTTGTAGATCGGGCACAACAGTTAAGGTATGCCTCCAGACTAATTTCGGGAATCCTAGATTACAAGACAATTATAGATGCTCGTGGTATACCTATTGACAGAGCTAGACATAAAGAAAAGGGACAACCATTATGTATGGAACAATACTACAGATTATTCACAAATTACAGGATTCCTGGTGTAACGAAAGATTCTTTAATTTCCAATGATACTCGCCTAATGCCAGAACCGGAGCATATCATTGTTATCTGTAAAAATCAGTTTTTCGTATTGGATGTTGTAAATAATTTTACAAGACTAAGTGAAGATGATTTGTATACGCAACTAAACAGAATATACAAGATGGCAGACGAGAACGAAAACAAGGCTGACCATATTGGAATTCTAACAGCAGCATACAGAGATCAGTGGTCGAAAGCTAGAGCAAAGTTAATGGAGGATTCAACAAATAGAGATTCCTTAGACGCGATAGAAAGATGTATTTTTGTCTTGTGTTTAGATAAAGGAATACCAATATCATTTAACCATCAGAACAGTATAGACGAAACAACTAAAAATCTTAGAGACGATGTTTCTCTTGCCTTTCAAATGTTACACGGCATGGGAACAAATTTGAATGGTGCAAATCGTTGGTACGATAAAACTATGCAGTTTGTTATATCTGAAGATGGTGCTTGTGGACTCAACTATGAACATTCGCCGTCAGAAGGAATAGCGGTAGTTCAGCTGATTGAGCACCTACTTCGATATATGGAGGAGGTACGAGTAAAGAGGTTGACACGCATGAATTCAGTCTGTGAACTTGCAAGTCCCAGAAAACTACAATGGAAAGTATTTCCTGAAATAACAGATGCGATAATAGCGTCATCGGAGGACCTAGATAGGAAAATATCAGACCTTGACCTGTATATACTGAGATTTGTGGAATTTGGAAAGGAGTTTCCCAAGTCACAGAGCATGAGCCCAGACTCCTTCATACAATTATCATTGCAGTTGACTTATTACAAGATACATAGAAAACTGGTATCTACTTATGAGAGTGCGTCGACACGTCGATTTAGACTTGGAAGAGTTGACAATATTAGAGCCAATTCACCAGCTGCACTTGAGTGGGTAAAAGCCATGATTGGTGAAGTGATGGCATCCGACGAAGAGAAGATGGATCTTCTACGTAAAGCTATGCAAAAACAAACAGAAATAATGACAGAGAATATTTTGGGACGTGGTACTGACTGTCATCTACTTGGTCTACGAGAAATGGCGATAGAATTGGGTCTTCCTGTTCCTGAATTATTCCGTGACGATGGATTCCGCATTGCTAACCACTTTTCATTGTCAACAAGTCAGGTTCCAACTACTATGGATGCATTCATGTGTTACGGCCCTGTCGTTGCGGATGGATACGGAGTATGTTACAACCCACACCCACATAATATACTTGTTTGTATAACATCATTCAAAAGACATTCGGAAACAAGATCGGATTATTTTGCATATACATTAGAAAGTAGTTTCCTGCAAATGCAAGAACTCTGTTTGAAAACATCTGAAACAGCACGACCTCTTCAGACAGTCCGTGAAAATTCCTATGAAGGTAAACAAGGAACTGAAGTTCGTAATGGAAGCGTTCATCGCATATCGAACGGTGATTGTCATCGGTCGCCAAATGGGAGCCCACGACGGTTATCAAGGTCAAAACGAATCGGTAGCGGTAACAATGAAGTGAAGTCAAATGGTACATAA

Transcript

Bpl_scaf_41052-2.9

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00755	Carn_acyltransf	Choline/Carnitine o-acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000542	Family	Acyltransferase ChoActase/COT/CPT	Interproscan
IPR023213	Homologous_superfamily	Chloramphenicol acetyltransferase-like domain superfamily	Interproscan
IPR039551	Domain	Choline/carnitine acyltransferase domain	Interproscan
IPR042231	Homologous_superfamily	Choline/Carnitine o-acyltransferase, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22589	CARNITINE O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004102	Molecular Function	choline O-acetyltransferase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007274	Biological Process	neuromuscular synaptic transmission	Interproscan
GO:0008292	Biological Process	acetylcholine biosynthetic process	Interproscan
GO:0016746	Molecular Function	acyltransferase activity	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00623	CHAT; choline O-acetyltransferase	EC:2.3.1.6	Glycerophospholipid metabolism	ko00564	PMID: 28812709
K00623	CHAT; choline O-acetyltransferase	EC:2.3.1.6	Cholinergic synapse	ko04725	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_41052-2.9 global RNA-seq network