Gene detail

Detailed information of Bpl_scaf_40982-1.20 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_40982-1.20	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4	Bpl_scaf_40982	27766	58414	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_40982-1.20

AAAATTTTAATCCTAATCACTGTTTCAACACTAGGAATCAAAATCAACCACAAGGTTTAAGAGTCGATCATCAGATGTGACGCTGTCGTACAACTGATTAGTCTATGTTTCCAATGATCGGTACACCACTAGTTTTTAGCATTAACAGAAAACATATAGTTTATGTTGTTTGACCTATAAACCTCTTTATCTTTGTAGGGTCATTACCAGGACATCATCAACAGCCATTAGACAATGTTAAAAAATGTAAAAATTTCTTGTCCACTTTAATTAAACTGGCAGCAAGTCAACCAGAGCAGACAGTGAAAAATGTTCGACAACTTATCCAAGGGTTAATAGACAATAAAGTAGAACCTGAACAATTTACAGAAAAATTACAGATAGAATTAAGATCCTCCCCTCAACCATATCTAGTGCCATTTTTAAAGAAAAGTTTACCCTCATTACGGCAGTCTTTATTAGAAAATAAAATGCATATAGAAGGTGTAAAACCTCCACCATTAGAAGTTATGAAAGATCAAATGAGGCCATCCCAAGTTAGAATGCCGCCTGCCCATAGAGCAGCTATACCAAAGACAGTCATGACAGTAGGGGGTAGGAGTCCTATTCCAAGTCCTGCAGCCAGTCGACCATCACATAGTAAACCTAAATATGAAGCTTTGAAAGATGATGATGATATAAATGACGTTGCCACTATGGGTGGTGTTAACCTGACAGAAGAAAGTAGAAATATATTAGCCAGTAATGCTGACTTTATTGGTACACAGATTAGGTCATGTGCTGATGAAGCATTTCTACATCATCCATCATTACAGAAGAGGGTGTCATGTATAGCAAGGAAGCATGGCATAGATGTAAATACAGACGTTTTAAACTTGGTATCTCATGCTACACAGGAACGATTAAGAGACTTGGTAGAAAAATTAGCAACTATATCTGAACATAGGATAGAAATTTATAAAAGTAGATCAAAGAATGAAGATCCAGAACAGCAGAAAATAAAACAGAAAGCTAGAGAGTTACAACAAGCAGAGAATGATAGGATGCGACAGAAAGAAGCCAATTTAACAGCATTAGCTGCAATAGTCTGGTTCAGGCAATATGAATCTCCAAAACGGTCCTCAATCTACTTCCAGAGGTACTTTATCAAGACCAAGAATAAAACGTGTCACCCTCAGGGACCTCTTGTTTTTAATGGAGGAAGAAAGGACATTGTGCAGTACAGACATTTTGTATAAGACATTTTTAAAATGAATTGTATCAAAACGTATAACTTGACTCTGGCAGCTAAGTATATTAACCCATGTGGGTTGACGAGGAGTAATATGGCAGGCCCAAAACGTGCTGACGGTGCCTTATCAGTGGTTAAGAGAGGGGTGGTGTCTATCAGTACCAATACTTGTATAAAAGTTCAGCAGGTTGATTTACTGTCCTAATTTGTGAACCTGATTCACCAAGGGAAAGTACTAATTTGTGAACCTGATTCACCAAGGGGAAGTACTAATTTGTGAACTTGATTCACAAAGGAGAAGCAACTATGTTTTACTTCCACAGAAAGAGAGTAGTTTGTTGTCTAGGTATTGCTGATGAAGACAGTGTATAGATTTACAGCTAAACAACATGATCTTGTCCTGCAGCAAGTCTTGAGAGATCTCTAGATATGTATGTTAGTTTACAGGCCCAAACCATTAAAGTCATGTCAGTAAGTGGTCAGGCCTAAACCTTCAGGCCCAAACCATTAAAGTCATGTCAGTAAGTGGTCAGGCCTAAACCTACAGGCCCAAACCAATAAGATCTTCATTTGAATGGTGAGAAAATAATATTGCTTTGCTGCTGTTTGTGAATTGATGTTTGAAAGTTAATAATAACCTTTAAGATTTATGTAAACAAGTATTCAGTACTATTCTCTATTTTTGTGAACACAATATTTTGGCTGTGGTGTATTTCTGTTCTTTTATGTTTATTTTACTTAAATAATACATATTTCAATTGATTTGAACATTAAACATACACTTTCTGATCCGGAATATAAGAAAAATCATTCTGGTAGCTATTTATTTTTTTTTCTAATTTTTTACCAAGGTATGCATAATGGAAGGTTGTTGAGAGTTAATACACATTCACATCTCAAGAGGTTAATATTTAGGACATTGTTTGGAAAATATCAGATGATTCTATATTGGAATAGGTGTAAGTTGAAGAACTATATTATTGAAAGAGTTTTTTGGAAAGTACGGGAAAATGTAATAATATGATGAATTAACAGGGGTTATATGTAGAGAAATGAGGGATTAAATTGACAAATCTAAAATGTCATGTGATATGTGTTTGAGGGAAGAAACTTGTACTTTATTTTACTTTCAAGAAAAACACAAAGTAACATTGTACTTAGAGAAGAAAGATAAATAAAGAGGTGTGTCATTCTACTGTGTTTACTATTGATAATAAAAGACTTTTACACATCAAAATATATTAATATGGATTTCAGAGAATACTTCAAAAATGTAATAAGAAACACTATGAGACAAGAATTGTTGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05236	TAF4	Transcription initiation factor TFIID component TAF4 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007900	Domain	Transcription initiation factor TFIID component TAF4, C-terminal	Interproscan
IPR009072	Homologous_superfamily	Histone-fold	Interproscan
IPR045144	Family	Transcription initiation factor TFIID component TAF4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15138	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005669	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006352	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0046982	Molecular Function	protein heterodimerization activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03129	TAF4; transcription initiation factor TFIID subunit 4	-	Basal transcription factors	ko03022	PMID: 28812709
			Huntington's disease	ko05016	PMID: 28812709
			Herpes simplex infection	ko05168	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_40982-1.20 global RNA-seq network