Gene detail

Detailed information of Bpl_scaf_40962-2.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_40962-2.15	UNCHARACTERIZED	Bpl_scaf_40962	234798	241467	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_40962-2.15

ATGTTCAAGAAAGTGATGTTTGGAATTATGAATAGATCACAGGTATTTCTAGAATGCAGTGATAGAAACCACCGCTCGCCAAAGCGAGAAGAGAAAAAATTCGGAACAATGTCTACTGATTTTGTTGGAAGTCTGGTGTCGTTGGACTGTGGAGAGGTTTTGGGAACATACCAAGGCCTGGTCTCCAAAATTGATGAGCAAACACAAATGGTTTCGATAAGTAAGGCATTCAGAAATGGTGTTAAATGTGATGTTCAAGATATCACTATCAGTGGCAAGGACATTAAAGATTTGAAAATAATAAAGAGTAGAGAAGAGGCAAAAACAGTCTTAAAGGAAGCTACGCCTTCTAAGCTAGTAACAGTTAGTTATGGATCAGATTGTCCGTCTCCTGTCAAGGTTTGCAATATGCAGTCATTCACATTTCCAGAGACAAATGGTCCGAGTGGTCAAGTCAGTGCTAATGTCAATGGCTATAAGAAGAATGGCTACAAACATATGTCCAATGGTCAGAGAAGCTCCCCTCAAAATGGACATAGAATATCTCCTACGAATGGACAGAGAGTATCACCTACAAATGGACAGAGAATTTCACCGCCCATAAATGGACAAAGAATTTCTCCTCCTAACAGTTATAGATTGTCCCCTCCAAATGTTAGCAATAATAGTGAATACAACAATACTAGACTTTCACCATCTAACGACCAGTATTTACAAAGAATTTCACCAAACAATAACAATAGGAGATCACCACCTAATGTTCATGGCAATAACAAAAAACGGTATTCACCCAACAACTTTAATCAGGAGAAGACAATTCGTCATACACCAACATATGAGAATGGCCGACATTCAGCAGGCTATCCTACTAAAGAGGACCAAGTTCTCAGGCCACGTCTCAATTCAACCAATGAAAATAGACGTAAAAATCCTTCATCTCCCAGAAAAATAGAGTTTCGCAAACGTTCTCAATCTAGAGACGAGTGTTTCAGTGCTCCTGCTACAACATATCTAGATGATTTTGATTTTGAGAAAAATTTAGCCTTATTTGACAAGAAGGCAGTATTTCAAGAAATTGAAAATTCTGGACCTGAAGTAATTAAGGCAGGTGATAATAAAAAGCCACAAAAGTACAGGTGTGATGAAAATGTTCTGGAGACGAAGGAAACTGTTTTACAACAAATCAAAGTACCAAATGGACAAGGGATGTCTCACTTATATGTAACAGATACAGGATTAGTTGTTCCCAGTATTTCTACTGACTTAAGAAGTCGTTTGTTTTCTGCTGCTGAGAAGTTCGGGTTTACCCAGGAAAGACAAATTGAAATGGTTGGTCGTTCAGCTAGTGAGATGGTTTTACAGTTACTTGGAGGATCTCATAGGTTAAATCCAAGCAACGGGCATCAGTTGCCAACTGTAGTACTCCTCTGTGGACCACACATACAAGGAACTCAGGCCATTAACTGTGCTAGACACTTGTCAAATCATAATGTTACAGTATATCTTGTTCTACCAAACTTTATTAAAATGAACAAGTATATGGAGGAGGAACTCAAGCTGTTTACTTTCTGTGATGGCAACAGGATCTCAAATCTCAAAGATCTCCCATCAGGATCAGTAGATATTATCATCAATGCTCTAGACAATCAGGATAGTCCCAATCTGAAAGACCAACTCTGGTATAAAACGTTATTAGAATGGGCCAACCAGAATCGAGCTCCAATCTTGGCGATGGACCCACCAGTTGATTCCAGTACAGCTCAGGCCAAGTGGTGTTTAAGTATAGGACTACCACTCAACATGTCTATGCAGTCGTCACAGCTGTACTTATGTGATCTTGGATTCTCCAAGAAAGTTTTCTCCGAAATTGGAATCAAATATGTGTCTCCATTCTCGCATAAGTTTATTATTCCTCTACATCCTAAAAAGTAAGAAGTCGGTTTGTTTCGTAGAAAGAGGAAAGCAAGGATATGATATCATTTATTGTACATTTCATCATCATTCATTGTGTTGTTGAAACATTCCTGACTGATGCTTTGATGCCAAAAAAGAAGAAATATGTGAGGAAAAGAGTGTCTCTTTGATAATACATACTTACAAGTCAATAGAAACAATGTCAATTTTGTTTTAAGTGCAGCCAGCAATTTAAAATTGACGATCTATTGGAATTTATTTTATTTTTGGTGTTCACTAAAGTGCTTTCAAAGATATTGTTTATTTCTAGTAATGATATGTGGTGCTCAATTCGTCCACATGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03853	YjeF_N	YjeF-related protein N-terminus	Domain	Interproscan
PF09532	FDF	FDF domain	Domain	Interproscan
PF12701	LSM14	Scd6-like Sm domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004443	Domain	YjeF N-terminal domain	Interproscan
IPR019050	Domain	FDF domain	Interproscan
IPR025609	Domain	Lsm14-like, N-terminal	Interproscan
IPR025762	Domain	DFDF domain	Interproscan
IPR034107	Domain	Lsm16, N-terminal	Interproscan
IPR036652	Homologous_superfamily	YjeF N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13612	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0031087	Biological Process	deadenylation-independent decapping of nuclear-transcribed mRNA	Interproscan
GO:0033962	Biological Process	P-body assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12615	EDC3; enhancer of mRNA-decapping protein 3	-	RNA degradation	ko03018	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_40962-2.15 global RNA-seq network