Gene detail

Detailed information of Bpl_scaf_40950-0.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_40950-0.8	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	Bpl_scaf_40950	90583	109239	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_40950-0.8

GCGTGTGTTGACATTTATTAGTTATTAGGATGTTATTTTCGGAATTGTTTTTTTTTTTCTTACTTTAAATTGGCCTTTTTTAGAGAGTCTATTTGTTTAGATCGATGTGCTTGTAGGTTAGTTTGTGACTGAGCTGTCGATTTAGATTTGTTTCCGAGTAACCAGTTCATTATCAATGTTTCAGTTTCTCCTCTGTAATGTTGACAGGTTCTAATAATAACCGGAAGTTGTTGTACGTCACTAAAAACGGGCTTCCGTCAGACCATGCGCAGTGAAAGTTAAAGCGTATGAAATCTCACAAAGAAATGTAGTTCATACATCATTTTCCGCTCGTACGTGCATATCACCTCCTGTCTTTCACTTATACTGAAGTTGCACTAAAAACAAGGAAAGCTGAACACTTAGATTTGTAACTGAACACGGGATGCTGGCAGTATGCCATCTATAGCTCAGACAGAATATGGAATAAAAGATGTCTGGCAAAATAACTTGGAAGAGGAGTTCAGAAAAATTCGCCATGTTGTTCAACAGTACAAATATGTTGCTATGGACACAGAATTCCCAGGAGTTGTAGCACGGCCAATAGGAGAATTTAGAAATGCAGCGGATTACCAGTATCAGCTACTGAGATGTAATGTTGACTTGTTAAAGATCATACAGTGTGGTATTACATTTTTAGATGAAAATGGTCAATCTCCATCTCCTGTGTCAACATGGCAATTCAACTTTAAATACAACTTAACGGAAGATATGTTTGCCCAGGAATCTATAGACTTATTACAGAACTCTGGTATACAATTTAAGAAACACGAAGATGAAGGTATTGATGTGTACGAGTTTGCAGAATTGTTAATGACGTCAGGAATAGTGCTAAGTGATAATGTTAAATGGCTGTCATTTCACAGTGGATATGACTTTGGTTATTTACTCAAGTTATTAACAGACCAACCATTGCCACCAGAAGAATCAGAATTCTTTGAATATTTAAGGATTTACTTTCCCAATATATATGATGTCAAGTATTTAATGAAGAGCTGTAAAAATTTAAAAGGAGGTTTACAAGAAGTAGCGGAACAGTTAGAGATTGAAAGAATAGGACCCCAGCATCAAGCAGGAAGTGACAGTTTGTTAACAGGGGCAGCTTTCTTCAAAATGAGAGAGATGTTTTTCGAAGACAACATTGATGATGCAAAATATTGTGGTCATTTATATGGACTTGGTACATCGTATGTTCAAAACGGGACAGGTTACGAAATGAATGTGTTCGGCACACAAAATCATAATTCTGTGTCATCACATGAAGAAACGAACTCTACATCAACAAATTCATAGAACCATGTGGAAGCAATATTTTGGAATCTCTTTAAAAGAGTTGTCGTAACCAAGATAAAAGGCCAGATCATGTGACTAAGAGAAAGACAGACTTTAATATATAATGTGACCAGTACTACCAATGAGATCATGTGAATATCGGCATGAAATAAGGCAGCTATTGTAAAACGGTTCATGACCTTGACCTTCATCTGACCTTCATCTGTGATAATTCAAACAGGGACAACCATCATGTCATCAATGCCTCAGGTGTAACCATGGTTATAATATTTCTATAGAGATATTTCAAAATATTGTTAACAAGTTCATTTTCAGATGTCCATTACATTTTTTGATTCCTGTCTTTACTTACTACATTGAATATTTATTTTAAACATATATTCCTAATAATAAGAGTATTTACATACTTATTCCTGTCCTTATTCTTTCTTTTCTTGTATATTTTTGAAAAATTGTAAAATTTGAATGTATAAAATTTTTCCAATATTTTAGACAGAAAGAAACTTGTAATGTTACATGAAAATGAAAATTATGTATAAACAAATAGTTATTTTTTCGAACCTTGAGACTGACTGAGATTGTGTTTTACTATAGCATCATTATTATGGACATCTGTAAATGGCTTTGTGTTGTAATATTGTCTTTCATCATATCATGTATCATCTCTCACGGCACAATTTATTCAGGGGACATAACCTGGGGCCACATTTAACATGTTTGAACTACATTTCCAATGTGACAGGCTTGACGAGAAAGTAAGTGGAAAGATATTAACTCAATCTCCCAGCAACTTCATATTTTGAACTATGAATTATTAAAGAATAAAAGGAACATTTCATTGTAGATCAATAATTTATTGAAAACTAAAAGACTTCAGAATATTTTGTCAAATTATCAAAATTTGTCTTGATGTTCCTTTCTATTGTCTTTTTTATAAAGTTTTATAATCATCAAAGACTCATCAGGACTTGGATGTGACAAATGATCATAATGATTGGTATTGTGATTATTGAATCAGCTTTAATCTGTTCAGAGAAAATCAAGTTGTATGGGAGATAATCCTGTCTCTAGTAATTGTTCTAAAATTCCATCAGTGTTTCAACTGAGGATTGCGACATTCTTGTTGCTAAAGCGACTGTGATATTTTTGTGATTATTTTCTGGAGCACCATTTTTTTTCATGTGTACATTTTAAACTGAGCAGTTTCTTGTATTTTAACCTGGATATTGACCCTAAGCATTTTACAAGTGACTTATAGTGCTGTTGTTTGGGTGATATTTTTTTTGTTATTGACCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04857	CAF1	CAF1 family ribonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006941	Family	Ribonuclease CAF1	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR039637	Family	CCR4-NOT transcription complex subunit 7/8/Pop2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000932	Cellular Component	P-body	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004535	Molecular Function	poly(A)-specific ribonuclease activity	Interproscan
GO:0030014	Cellular Component	CCR4-NOT complex	Interproscan
GO:0030015	Cellular Component	CCR4-NOT core complex	Interproscan
GO:0043928	Biological Process	obsolete exonucleolytic catabolism of deadenylated mRNA	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12581	CNOT7_8, CAF1, POP2; CCR4-NOT transcription complex subunit 7/8	-	RNA degradation	ko03018	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_40950-0.8 global RNA-seq network