Detailed information of Bpl_scaf_40897-6.10 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_40897-6.10UBIQUITINATION FACTOR E4Bpl_scaf_40897676399703339-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|U-box

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04564U-boxU-box domainDomainInterproscan
PF10408Ufd2P_coreUbiquitin elongating factor coreFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003613DomainU-box domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR019474DomainUbiquitin conjugation factor E4, coreInterproscan
IPR045132FamilyUbiquitin conjugation factor E4Interproscan

PANTHER
PANTHER termDescriptionSource
PTHR13931UBIQUITINATION FACTOR E4Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0034450Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0036503Biological ProcessERAD pathwayInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10596UBE4A; ubiquitin conjugation factor E4 AEC:2.3.2.27
Ubiquitin mediated proteolysis ko04120PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_40897-6.10 global RNA-seq network
TOP