Gene detail

Detailed information of Bpl_scaf_40595-6.12 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_40595-6.12	RAB11-FAMILY INTERACTING PROTEIN	Bpl_scaf_40595	610099	664870	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_40595-6.12

CAACGTGGGGGTGGTAAGGCACATTGTAATCTACCTGTAAACATCAGGATAAATTTAGGTAATTTTATTACTCAGTGGGTGTATTCCGTACAGAATGGAGGAAGACGTTCGGGATAAAATAAGAGAAATATTTAATGTGTGTGACGAGAACAAAGAGGGATTTATAACTATCGATCATTTTAAGAATTTGGCCAAGGAACATTTCGGTACTGAAACTGAGGGCCAGGAAATAATTGGTATAGTTCAATTGTTGGATCCAGATGGGAAAGGGAAAATTAATTTTGAAGAATTTTGTAGTGGAGTTCAACAAATAACAGATATAAGATCTCCCACCAGTACTCCTATCCAGAAAAAAGATCCATTTTCGACGTTGAATTTCGATTTGCTAGGAGACATATCACCCACTGAGTGCCAAGAAACCTCTGAAGCCAGTGCATACACATTTAATGAATACGACACAAACACTGACGAAGACAATGGTGTATTAATAGATTTATCTACTCCAGAACCTATACGACGAACAAATAATACTTATAATGGGATACATGACTACACAGACTTTGGTGACGAAGATATAGAATCTGATACATCTGATCTTTCTCACAACAAGAGTTGTGAAACTTGTCATAAAATTAGAAGTAAGCGAGGTGTCCATTATAGAGAAAAACACAATAGAAGAACTTCAGGTACAAGGAAGTTAACCACAACAGCATACGCTGCACAGTTACATTCTAAATCTAGAAGTCCAGCTCCAGATGAAGTGTTTGATGATATAGATGGTAATTTTCAGCATTTAAATGATAGAGTTCAGTTTCTTGAAAAACAGCTGGTCAATTTATCAGAAGAAAAGAGTACAACTGATGGTGCTCATTTTAAACTGAAAGATGAAAATACAGTGCTGATGGATAGTGTTGTTGACAGAATACATATGTTGGAGGAACAAGTTAAAGATGTAGAAGTAAAATCAGATGAAAGAGTGTCTGAAGAACAAAAGAAATATAAAGAGATTCTGTCTCGACAAGAAAGAGAAAAATCAGAGCAAATGGAATATTTCACACAGAGGTTGCAAAATTTAGAAAAAGAAAATGAGCTTTTAAAGATGGAAAATCCAAGACTTAGGAATGAAATAGATAGACTAAAAATCGATAAATTAGCCTTAGAAGATAAGCTTACAGAAGTACAAGTAGAATACAATGCAGTAATGAATGAAAATTCTGACTTAAAATTAAAGTTTGATAGAGAACGAGAAACAACAGGCCAGCTTCTTGACGAGTTAGGAAAAGAATTAGGAGAACTCAGACAGTACAAGATTGAGACAGAGATGAGACCAAGACGAGACAGTCATATACAGATCCATGGAAAATATCAAAATCTTCAGGTGGAAGTTAATCGACTTAAAGAGGCTTTAACGGTGGAATGGAATTCAATCTCACAGGAAAATAGAGGCTTACATGAGTTAAATGAAGATTTAAATGGTCAGTTACTTTCCCGTTGTATAACAGAGGGTAGAAATCTGACAGAGGGCAGTCAAGAGAAATCCTTGGCATCAGAATTAGAGCATCTTACAAAGACAGAGTTGATGGGAAGAGTTCAAGAGCAAGAAATTGAAGTAATTAGACTTAAACAATATGTGGACAAAATATTATTGGCGATTCTGGAGAAAAATCCATCAATTTTAGAAGTTACACGCTGATGAAAAGACAAATCAGTGCTTAAGATATTGAAAAAAAAAAGATTTCTGTGATAAACTGCTCAGGTCTCAGTTGCCATTGGAAACATGGTGACCTTATGTGGCGGATAGCATAAGTTTTCGTCAGTGAGATGTTGGAATATTATGCAAGTACCTAGAATGGAACTTTAAACAGAACTTTCGTCCATTTAACAATGACTTGCCTACATCATTGTTGAGATTTTTGTTGTTATAAAAAAATTGTTACAAAATATGAACATTTTAGTAGATATTTTTTCTATTTTTGTAAAATAGGAGAAGTTTTTAGATATTCATGATTTATCATGGCTTATCGTTGCATGATTTTTGTGATTTGATAAAAAGAAAAAAAAGCAAAGAAAAAAAAGCAAAAAAAAAATTGGAGCCACTTTTATAAAGATTATATTTAATAATGTTTTACATAGACTGAAGATAATATATGAATAAATTTTAATACATGCTGTCCTTTTTATAAAATGCTGAGATTTTTTAAACAGGCAATGACCGTAACATGTAAAATTGCTAAATACTTGTTTATTGAGCCTTGTTTTTAAGATAAACATGATAAAAAGAGATACAGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09457	RBD-FIP	FIP domain	Motif	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR019018	Domain	Rab-binding domain FIP-RBD	Interproscan
IPR037245	Homologous_superfamily	FIP-RBD, C-terminal domain superfamily	Interproscan
IPR051977	Family	Rab11-interacting regulator of endocytosis and ciliogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15726	RAB11-FAMILY INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0030139	Cellular Component	endocytic vesicle	Interproscan
GO:0030496	Cellular Component	midbody	Interproscan
GO:0032154	Cellular Component	cleavage furrow	Interproscan
GO:0032456	Biological Process	endocytic recycling	Interproscan
GO:0032465	Biological Process	regulation of cytokinesis	Interproscan
GO:0055038	Cellular Component	recycling endosome membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12485	RAB11FIP3_4; Rab11 family-interacting protein 3/4	-	Endocytosis	ko04144	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_40595-6.12 global RNA-seq network