Gene detail

Detailed information of Bpl_scaf_40568-1.13 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_40568-1.13	CONDENSIN-2 COMPLEX SUBUNIT H2	Bpl_scaf_40568	153962	193913	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_40568-1.13

ATGTGGAAAAAGGTTGAATATTTATACACGTTAGTTTATCAGACCTTGGACCTTGTTGTGAATAAAAAGAGGCAAAAAGCCAACAAAGATGAAAATAGTAATAATGATGATGTTTTGGATGATAACGATGAAGATGAAGAGTTCCTTACTTTAGATGATATACAGGAACACAAGAATATTGTTTTAAAGGAAGAATCAGATGATAAGTCAATCCCACCAGTGCCTCAGATCCCATTGTCCTTGATTCCATTCGATGATTGTGAAAAGGGAGATAAACCTCTTCTCAGTAAATCAGGTGAAGTGTTAGCCAGTAGAAATGACTTTAAGATGAATACCTGTTCAGTTCACACGACTGGTACCCTACTGTTAGACATGACTCACTTGTCTCTTCTAGAAAAGTCGTTACAGATGTCATTCTCATCGTGTGAGTCTATGCATACTGATCAGCCAAATTCAATACAAGATCCAGTGCACATGGCAGAGAATGGTGAACAAGTCAATAACATGTCTCATGATGGTGACCATGATCACGTTTTTGACATGCCACATGATGATGACGCAGATGTTGAGGCTCTACCTGTAGATGGTGGAAATTCTGAAATGCCACCTACAGATGAGGTGGATGGTGGTGCACCTGATCTACCCAATCAGAATGCAATGGATACTGAAGATGGTATTACAGAAGAGGTTGTTGGTTTACGTAGATCACAAAAAACAAAGCAAGTCAAGATACCAACTAAGCCAGTTGTCAACGTGATGGAGCCATTAGAACCCCATGATGCTGGTAAAATAGAAGAGAAAACAATTAAAAAAGGGAAGTCATACGTTAGGATACCATTGTGTCTAAGGGATCCATCGAGTAAAAAGAGGAAAAGACATCCTGCTCCAGAGAAACAACCTCCTCTGAAGCAATATCTTACGAAACATGCAGGCTCACTAAAGCCAACATTTCCAAAGAATCAGATGAAAGCATCAACATTTTCTGAATTTGAAGTGAAATATTACGAGGAGTACAAAAGAAGATTATCAGCCTTAAAAAACGAAAGGAAACTAAAGAGTCACACAGAGGATGTGGAGGAAGAAGATGATGATGATGAACCTGAAAACATTGTGGATAATCCTGAAGGAGATGGCTTTGGGTTTGATGGAGAGGAAGCTGATGATTTGAACGATTCCCCATTAATTGATGATAAATTGTTCCAAGCTATGGAATCAGCTATGGCCACACACCAGGAAGGATTTGAGTCAACAAGGGGAAGAAGTGAAGGAAATTTTATAGCGGATTCATCAGTTATTAGTGATTATGAAGAACTTGTCAGACAACATGTGGATCAATATTTAGCTAGTGCCCAGGAATATGCCCAGATTACAGAACTATCACAGAGGGTATCAGACTGGGAAGATAAAGTTCTACCTAAGTTAGAAGAAGAGGATAAAAGACCTCCATTTGATATAAATATTTATGGCTCATTCATCTTAGACAATTTGGAGAAGAAAAAAACTGTACCATTTAAGCAAATTGTAAAACATAAACCTACGTTTGAGATCTGTCGGATATTCTTAGCCTCATTAATGTTGGCAAATACATCAAATATAAAAATATACCAGAAAGGAGACTTCCAGGAAGGTGTGGACAAATATGAACTAGAATTGTTGACTAAAGTCAGACATTTTGAGCAATTAGAAGAGTATCAAGCACCATCAATTACTAAATCATAACAGTTATAGAAACAAATATCATTTTAATTTTGACCTTGTTTTAGTCATCACTTAGCATCTGGTGTTAGCTGCTGTCAAACATTTTGACAACATTAGATATATATATATATATATGTCTGAAAATGAAACCAAACAGTGTTAGAATTAGATTTTGAAGCTGTAAAATTTTTGTTCTTCCCTCAACAGGATTTGAACTCACACCATTGATACACTGCAGCACCATTCGCTTAGCCTTACGTCCAGCGCCCTAGACCACTCGATTACATCCACTCGGTGATCTAATCTAAAAATCTAATTCTAATACTGTTTGGTTTAATTTTCAGATGTATATTTAATATTTAGGATTAACCTAGTATCACAAGTAACTTTGAGATCCAGTGGGACAGATATATTGTATGGTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06278	CNDH2_N	Condensin II complex subunit CAP-H2 or CNDH2, N-terminal	Family	Interproscan
PF16858	CNDH2_C	Condensin II complex subunit CAP-H2 or CNDH2, C-terminal wHTH domain	Domain	Interproscan
PF16869	CNDH2_M	Condensin II complex subunit CAP-H2 or CNDH2, mid domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009378	Domain	Condensin II complex subunit H2, N-terminal	Interproscan
IPR023093	Homologous_superfamily	ScpA-like, C-terminal	Interproscan
IPR031719	Domain	Condensin II complex subunit H2, middle domain	Interproscan
IPR031737	Domain	Condensin-2 complex subunit H2, C-terminal	Interproscan
IPR031739	Family	Condensin-2 complex subunit H2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14324	CONDENSIN-2 COMPLEX SUBUNIT H2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000796	Cellular Component	condensin complex	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0010032	Biological Process	meiotic chromosome condensation	Interproscan
GO:0030261	Biological Process	chromosome condensation	Interproscan
GO:0051306	Biological Process	mitotic sister chromatid separation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11490	NCAPH2; condensin-2 complex subunit H2	-	Chromosome and associated proteins	ko03036	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_40568-1.13 global RNA-seq network