Gene detail

Detailed information of Bpl_scaf_40105-5.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_40105-5.8	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Bpl_scaf_40105	522822	552904	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_40105-5.8

ATGTACCTTTTACAAAAGAAGCAGAACTTCAAAAAGAAATTGCAAAAGAAGAGAGAAATACGAGTATTTGTATCAAGTACATTCAAGGACTTTTATAAAGAAAGGGATGAAATAATTAAAAAGACGTTTAGAGAGATAAACAGGTTATGTACAGACCGAGGTGTTTTCTTTACCTACGTAGACCTAAGATGGGGAATAACATCTGAACAGGCCAGTGACGGCAAAACTATTGCAATATGTTTACAAGAGATTGAAAGATGTCGGCCATACTTCATTTGTTTAATGGGAGAAAGGTTTGGATGGTCACAGAGGAAGGGTGAAGATGATGATGTTCTAAACATGACATATGACTATGCAATAGAGAATTATCCTAATCTGAAGTGGATTGATGAGTATAGATATGATTCAAGTGTAACACAGCTTGAAGTTTTTCATGGAATTCTTAATAATCCAAACGTAGATAATGAAAAATGTTTTGTTTATATGCGTCATCCACCTTCGAAGACGGAGCTTTCAGAAATAGAATACAAGAAACTTTCATCAGAATCAGAATGGCATCATGAACGTCAGGAATGGTTAAAATCACAAGTCAAACAGCAACCAGGAATTAATGTTTCCACATTTAAAACACCAACAGAAGTAGCCGAACTAATTCAAAAGGATCTAGAGCGTTGTATTGATGTTGAATTTCCTAAAGGCACAGAACTTACTCAGTTAGAACTAATGAGAGAGGCACACTCCGCATTTGCATCAGCTCGACAGCGTGTATACATAGGAAGTCAAGATTATTTCACAGAAATTCACAAGTATAGAAATGAGAATATTACGCAACCGTTCGTTATTCTTGGTGAATCAGGTAGTGGAAAATCTTCTCTGATTGCAAACTGGGCAAAACAAGTCGAAGATACAGAACCTGACACATTTGTTTTTGTACATTTTATAGGAAGTTCAGCAGATAGTTCAGACTACTTAAAACTAATAAGACGTTTGTTTGAGGAGATGAAAGTATTTTTTGACTTTGATATGAACATACCATCATCAGACACTATCCTTATAAATGAGATCGGCCAATGGTTGAGAATGGCTGGTTCTAACACTAAGGTAGTCATTGTTCTTGATGCCTTGAATCAACTTGATGATGGAACAGGAGAACATGGATCTGAACATGATTTGTTGTGGATACCATCAGAAATCCCACCCAACGTGTTCTTGTTGATGTCAACTCTGCCTGGAAGGGCAATGAATGCTTGTGTTAGAAATAAATGGCCAAGTATGAAAGTTAAACCATTAGAGGATTCACAAAAGATGCAAATCATCACTGATTACTTAGAGAGGATTTATGGCAAAACTTTAAACAAGGAACAAAAAGAAATGGTGGTTAATGTTAAACAGACATCAAATCCTCTTTACCTGAAATCACTCCTGGATGAGGTTGAAGAATTACCATATCTATGGACTAAAGCTGGTGAACTAGATAAACTGAAAGCTACTATTACAGATCTTGGCGTATTTTACAGACTTGCCGATGATGAAGATGGTATATTTGAATTGATCAAAGCTTGGAGAAGGCTTGGAGGGTTCTCGTTATCAGAAGAAGCATACATGTCACAGTTATTGAAGATACCAAAATCATCTGTAATGGGAAATCTTACATACTACTGCAGATTATATAGCCTTCTTGGAAACTTTTTCTCAACACTTGGTTTGATTGAGGCAGCAAAGAAGGTCTACAAAACTCTGATCAAAATACTGGAATTAAACTTTGATGAAGTACATGACACCATTGTGTATAGCGCTTTCGATCAGAGTTGGAAATATCGCTGTAACCATCCAGTTGTTATAAAGAGCTTACAAGACCTTGGTACTGTGTACACTAAACTTGGAAGAAAGGACAAAGCGATATCTGTCTACATTGATGCTATCTGTCGCCAAAACAGAATCGAGACACCTACTCAAAAACTTCGGTTATGTGATGGACTGCTTGGATTGTCAGCTGTGTATGTACAGAAGGATGATATGTTAGAGGCCAAAAAACTGATGACAAGAGCTTTAGAACTAGCCACATCTGTACTTGGAAAGAAACACCATTTTGTAGCAGACATTTATACAAAGCTTGGACAACTAGCCTACAAACAACATCGTTTAGACGAGGCGCTAGCCAATTTTTTGCAGGATCTCAAAGCGACATGTAACGAGTTCGGAACTAATCATCCATTTACAGCTAACATTCTGAATGAAATCGGACTCGTCTATGATGACAAGAATGATGAAATTGCAGGACAACTTTATGAGGCAGCTTTAAGAATAACACTTGACACCTATGAGTCGTACAAGATATATGTCATGTTCCTTGGTGATGATCATCCTGATACTATTAGTGTAAAACATGCTTTAGACTTGGTAGCTGATGCAATGCCGGAAATAAAACAGGACAGTCTTGTCTAA

Transcript

Bpl_scaf_40105-5.8

GCAAATTAACAACCCGCTGTTGGAAACACAGACATCACAAACAGAAACTCCAGTTTTGTCATCGTATTGGAATACAGTGAAAATGTACCTTTTACAAAAGAAGCAGAACTTCAAAAAGAAATTGCAAAAGAAGAGAGAAATACGAGTATTTGTATCAAGTACATTCAAGGACTTTTATAAAGAAAGGGATGAAATAATTAAAAAGACGTTTAGAGAGATAAACAGGTTATGTACAGACCGAGGTGTTTTCTTTACCTACGTAGACCTAAGATGGGGAATAACATCTGAACAGGCCAGTGACGGCAAAACTATTGCAATATGTTTACAAGAGATTGAAAGATGTCGGCCATACTTCATTTGTTTAATGGGAGAAAGGTTTGGATGGTCACAGAGGAAGGGTGAAGATGATGATGTTCTAAACATGACATATGACTATGCAATAGAGAATTATCCTAATCTGAAGTGGATTGATGAGTATAGATATGATTCAAGTGTAACACAGCTTGAAGTTTTTCATGGAATTCTTAATAATCCAAACGTAGATAATGAAAAATGTTTTGTTTATATGCGTCATCCACCTTCGAAGACGGAGCTTTCAGAAATAGAATACAAGAAACTTTCATCAGAATCAGAATGGCATCATGAACGTCAGGAATGGTTAAAATCACAAGTCAAACAGCAACCAGGAATTAATGTTTCCACATTTAAAACACCAACAGAAGTAGCCGAACTAATTCAAAAGGATCTAGAGCGTTGTATTGATGTTGAATTTCCTAAAGGCACAGAACTTACTCAGTTAGAACTAATGAGAGAGGCACACTCCGCATTTGCATCAGCTCGACAGCGTGTATACATAGGAAGTCAAGATTATTTCACAGAAATTCACAAGTATAGAAATGAGAATATTACGCAACCGTTCGTTATTCTTGGTGAATCAGGTAGTGGAAAATCTTCTCTGATTGCAAACTGGGCAAAACAAGTCGAAGATACAGAACCTGACACATTTGTTTTTGTACATTTTATAGGAAGTTCAGCAGATAGTTCAGACTACTTAAAACTAATAAGACGTTTGTTTGAGGAGATGAAAGTATTTTTTGACTTTGATATGAACATACCATCATCAGACACTATCCTTATAAATGAGATCGGCCAATGGTTGAGAATGGCTGGTTCTAACACTAAGGTAGTCATTGTTCTTGATGCCTTGAATCAACTTGATGATGGAACAGGAGAACATGGATCTGAACATGATTTGTTGTGGATACCATCAGAAATCCCACCCAACGTGTTCTTGTTGATGTCAACTCTGCCTGGAAGGGCAATGAATGCTTGTGTTAGAAATAAATGGCCAAGTATGAAAGTTAAACCATTAGAGGATTCACAAAAGATGCAAATCATCACTGATTACTTAGAGAGGATTTATGGCAAAACTTTAAACAAGGAACAAAAAGAAATGGTGGTTAATGTTAAACAGACATCAAATCCTCTTTACCTGAAATCACTCCTGGATGAGGTTGAAGAATTACCATATCTATGGACTAAAGCTGGTGAACTAGATAAACTGAAAGCTACTATTACAGATCTTGGCGTATTTTACAGACTTGCCGATGATGAAGATGGTATATTTGAATTGATCAAAGCTTGGAGAAGGCTTGGAGGGTTCTCGTTATCAGAAGAAGCATACATGTCACAGTTATTGAAGATACCAAAATCATCTGTAATGGGAAATCTTACATACTACTGCAGATTATATAGCCTTCTTGGAAACTTTTTCTCAACACTTGGTTTGATTGAGGCAGCAAAGAAGGTCTACAAAACTCTGATCAAAATACTGGAATTAAACTTTGATGAAGTACATGACACCATTGTGTATAGCGCTTTCGATCAGAGTTGGAAATATCGCTGTAACCATCCAGTTGTTATAAAGAGCTTACAAGACCTTGGTACTGTGTACACTAAACTTGGAAGAAAGGACAAAGCGATATCTGTCTACATTGATGCTATCTGTCGCCAAAACAGAATCGAGACACCTACTCAAAAACTTCGGTTATGTGATGGACTGCTTGGATTGTCAGCTGTGTATGTACAGAAGGATGATATGTTAGAGGCCAAAAAACTGATGACAAGAGCTTTAGAACTAGCCACATCTGTACTTGGAAAGAAACACCATTTTGTAGCAGACATTTATACAAAGCTTGGACAACTAGCCTACAAACAACATCGTTTAGACGAGGCGCTAGCCAATTTTTTGCAGGATCTCAAAGCGACATGTAACGAGTTCGGAACTAATCATCCATTTACAGCTAACATTCTGAATGAAATCGGACTCGTCTATGATGACAAGAATGATGAAATTGCAGGACAACTTTATGAGGCAGCTTTAAGAATAACACTTGACACCTATGAGTCGTACAAGATATATGTCATGTTCCTTGGTGATGATCATCCTGATACTATTAGTGTAAAACATGCTTTAGACTTGGTAGCTGATGCAATGCCGGAAATAAAACAGGACAGTCTTGTCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729	NACHT	NACHT domain	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13271	DUF4062	Domain of unknown function (DUF4062)	Family	Interproscan
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007111	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR025139	Domain	Domain of unknown function DUF4062	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051191	Family	DDB1-CUL4-associated factor 12	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19860	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0080008	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19360	NPHP3; nephrocystin-3	-	Cilium and associated proteins	ko03037	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_40105-5.8 global RNA-seq network