| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_39700-0.5 | SMARCE1 REGULATOR OF CHROMATIN | Bpl_scaf_39700 | 46834 | 82874 | - |
| CDS | |||||
| Bpl_scaf_39700-0.5 | |||||
| Transcript |
| Bpl_scaf_39700-0.5 |
| Protein |
| Bpl_scaf_39700-0.5 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | HMG |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00505 | HMG_box | HMG (high mobility group) box | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009071 | Domain | High mobility group box domain | Interproscan |
| IPR013087 | Domain | Zinc finger C2H2-type | Interproscan |
| IPR036236 | Homologous_superfamily | Zinc finger C2H2 superfamily | Interproscan |
| IPR036910 | Homologous_superfamily | High mobility group box domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46232 | SMARCE1 REGULATOR OF CHROMATIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0016514 | Cellular Component | SWI/SNF complex | Interproscan |
| GO:0016922 | Molecular Function | nuclear receptor binding | Interproscan |
| GO:0031492 | Molecular Function | nucleosomal DNA binding | Interproscan |
| GO:0045892 | Biological Process | negative regulation of DNA-templated transcription | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11651 | SMARCE1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 | - | ATP-dependent chromatin remodeling | ko03082 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_39700-0.5 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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