Gene detail

Detailed information of Bpl_scaf_39399-3.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_39399-3.4	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Bpl_scaf_39399	317617	341909	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_39399-3.4

GAAACATTTTCCATTGCAGGCCATAGCGGAGTAAATCAACTAGGTGGTGTTTTTGTCAATGGCCGACCACTTCCGGATTCTACAAGGCAACGAATTGTTGAACTTGCCCATAGTGGCGCTAGGCCATGTGACATTTCTAGAATTCTTCAAGTGTCAAATGGGTGTGTTAGTAAAATACTTGGACGTTACTATGAAACGGGGTCAATTCGCCCACGGGCAATAGGAGGCAGCAAACCCAGGGTGGCAACTAATGACGTTGTTGGAAAAATTGCTCAATACAAACGCGAGTGTCCATCAATATTCGCATGGGAAATTAGAGATCGTCTGCTATCAGAAGGATGCTGTAACCAAGATACCATTCCTAGTGTTTCATCCATTAATCGTGTACTTCGCAATCTGGCTAGTGAAAACCAGAAGTTTATGGGACAAAGTGCCATGTATGATAAATTAGGACTTATAAATGGTCAGGCCTGGCACCGACCAAATCCGTGGTATGCATCTAATATGCACGGAATGCCAGGAATTCATACTCCATCGGTGTACCCAGCACATCAGAGCACAACCAGCAACATAGACAAGAAAAATATAGAAGGAGTACATTCCAGTTCTGAAAGTAACAACAGTGAAGGGCAAAATGGTGAGGCAGATGAACAATTACGCATGCGTCTTAAAAGAAAATTACAACGCAATCGAACGTCTTTTACAGCGACGCAAATTGAAGCTTTAGAAAAAGAATTTGAAAGAACGCACTATCCAGATGTTTTTGCTAGAGAACGTTTAGCACAGAAAATAGATTTACCCGAAGCGCGAATTCAGGTTTGGTTTTCAAACAGAAGAGCAAAATGGCGACGGGAAGAAAAGCTACGCAATCAAAGACGAGATATTCCAAATGGGGCACCACGCCTTCCGGTAAATGGTAGCTTTCCAAATGGAATGTATCCATCATTGCATCAGCCAATAGGAACAATGTCAGAGACATATAGCTCTATGTCGATGCCCACCGCCAGTTACTCGTTATCTAATAACTTGTCGACAAATCCAGCTTGCCTACAGTCAAATAATTCCTCATCTTACTCCTGTATGATACCAGAATACTCATCTAGAGGTTATGATCCGTTATCGCTAAGTTATTCCCGTCCATCATGCAATCCAGCTTCCGGTATGCAGAGTCAGTTAACGCACAGTTCTCATAATGGTGCATCAACGGGTCTTATATCACCGGGAGTTTCCGTTCCTATTCAAGTACCTGGCGGAGGACATCCGGATATGGGATCTCATATGGGCGCAATGACGTCACAATATTGGCCCAGATTGCAATGACGGTGACTTATTTAGTATATGTGATTAAATATTTGGAAATCCAGACTAGAAGTCTTGATATTGACTACAGAGCAAGTTGAGGATTGAGTTACTGTTCTTGTTTGACAGGACAGAATGGAATTTACGGGACATACGATTGGCCAGTTTAGTTTGTATCAATGCCGTTGACGACAATGGACTTTGATTGGAGGAAGAGATTCATAGTTAAATAAGCAAAACAAACTTTTTTCATTGCCAGTTATAGTGCTCAGGAAATACAACATTTTAGCGCTAATAGTGCTACATGAATATGCTAATTGTTTAGCACATGCTAGTTCACATACATTTTATAGCAATCACAAATCACGTGACTTATGTCACTAGATATGAAATCCAGTATATTAACTGTTAATTGTACATTAATTAATGTTAATTTTTACTTGGCTTTTACTTGTTGTTACTGGTTGTTGATTTGTACATCATTTTACTTACATATGCCAACGTTAGCGTAAATTGCTTCTCCGGGGGTAGATTTTGTAATGAATTCAATTTTAATCATATTATATTTTTATTTGGTTGGAATGTATGACTATCAAGTCTTAGATGTAATCTTAGATCATAATGCGAAATATGCATGTTCAGATAGGACTAATAAAATGGGGAAAGAACAGAAAATACTACAATGTAGGAACAGTTCCAAATGTCAATAGAAAAATCATACAAATATGCAAAATTGTCACAACCATATGCATGACCACATACTTGTTGACTTGAAACAGGCACTTTGATAAACAGGAGCATGGTTAAACTAGTTTTAATAGTACAAACCTTCCTCTTGCTGAAATGAAGCTGTCAAGTGTTTTACAAGCATGGTTTTCCTACATGATCAAAGTAGCTTCAACTCCCTTTGGTTGTATTGCTTCCAAAACTTTTAAATTATTTAGCTTTCCAATCTTTTGACTTTGAGCGTACGTTATGAAGGTTATTCCAGAAACGTACGTTATGAAGGTTATTCCAGTAACGTACGTTATGAAGGTTATTCCAGTAACGTACGTTATGAAGGTTATTCCAGTAACGTACGTTATGAAGGTTATTCCAGAAACGTACGTTATGAAGGTTATTCCAGAAACGCGCGTCGCGCGCACTAAGCTTGATATCTACGTTTTTATTCAAATACTCGATGTTGGTTTTCATACAATATGTTTCTGCTTCAAAAAATTGTCATTCATTATAATTTCTTTTTTTTACATTGCATTAATTTATACCTGAGATCTGTTTGTTGGGGTAATCAAAACCTCGTACATAATAACGTTTTATAGACATATAATTATTGTTAATCGAATTTCATTTTCTTTTATAGAAAAATTCCGAAAAACGCACAAATAATACGCAATAAATGTTAGAAATGATGTGTTTTTTTTAGATATTCAAATATATTATGTTTCCATTATACTAGAAATTAAAACAAAGGAAAACAAAATAATTAAAACTATTTATTTTATTCTTAAAGCGGTGCGGATTCATTTGGAGTACAATACCAAAAACTGAGTAGAAAAGTAGATCATTATACTATATACATTCTGTGTAATTTTGTTTCAAATATTATGCTCGACAATTATTAAAAAATACGAAAACAAAAACATATCTATTTTAGGATATGAGTATAAACATGATATGTATCCATAATTCGTAAAACAAATGTCTAAAAATTATTTCGATTGAATAAATGTTGTGTTACATGTTATTTGAAAGATGTATGGTACAGTTTCATTTTTTAAGATCTCGACCTATTTACCTCGCTTAGCATTAGTGTTCATCCGCACAATTTTGAATTGTTTTTGCATTACATGTCATAAAAGTTGAGTAAATTAAATAAATAAATATTGATAACTAAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox
Transcription Factors Family	PAX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00292	PAX	'Paired box' domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR001523	Domain	Paired domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR043182	Domain	Paired DNA-binding domain	Interproscan
IPR043565	Family	PAX family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45636	PAIRED BOX PROTEIN PAX-6-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08031	PAX6; paired box protein 6	-	Signaling pathways regulating pluripotency of stem cells	ko04550	PMID: 28812709
K08031	PAX6; paired box protein 6	-	Maturity onset diabetes of the young	ko04950	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_39399-3.4 global RNA-seq network