Detailed information of Bpl_scaf_39399-1.8 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_39399-1.8SMALL NUCLEAR RIBONUCLEOPROTEIN SMBpl_scaf_393999053791046-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR027141FamilyLike-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Interproscan
IPR034101DomainSm-like protein Lsm4Interproscan
IPR047575DomainSm domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000387Biological Processspliceosomal snRNP assemblyInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0000956Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005688Cellular ComponentU6 snRNPInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0033962Biological ProcessP-body assemblyInterproscan
GO:0097526Cellular Componentspliceosomal tri-snRNP complexInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12623LSM4; U6 snRNA-associated Sm-like protein LSm4-Spliceosome ko03040PMID: 28812709
RNA degradation ko03018PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_39399-1.8 global RNA-seq network
TOP