Gene detail

Detailed information of Bpl_scaf_39147-3.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_39147-3.7	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10	Bpl_scaf_39147	293234	305519	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_39147-3.7

ATGCTCCTGTTTTGTAATACCAAAACCCATGACAGATTCAAGACATCAACAAAACTTATTTATGATTTTTGTAAAAACTGTGAAAATAAACGGCAGCAAGACGAAGCCCTACCAGAACTGATTGTAAAACATTTTGACGATGAACAAATATGGCAAGAACTTGAACTGCAAAATAATTCTGTGGTAGATAAACTTTTAGGAAACGTTGTAGGTCTTGTAACCAAGTTAGATTCTGTTAATTTTCTGGCAGATGGCCATGGTATTGAAAAACAAACTAAAAGTAGAAATAAGAAGACACAAAAGAAAGATTTAATGAATGATCCTAATAATGAAGAAGAAGAAGAGAGCGATGAAACAGATAAAGAAATTGATCAAATAAAATTAAAATTAGAAGATTCTGAAGATGAAGATATGAATGATGACGATGATGATGATGATGATGACATGGACTTTGATTTTGACTCCATTAATCCAATACAAGATAAAAACAATGACAATGACACTAGTGATGATGCTGATGGCAATGCAAATGTAGATGAAATAGATTTAGATGCAGGTAAAAAGAAGAAAAAGAAGAAGAAACCTGTTAAAGGAAGTATTGTTGATGACAAGTTTTTCAAATTGGCTGAGATGGAGGCATTTCTTGAACAAGAAGATGCAAAAGAAATGAAAAAACAAAGACAAGAAGAAAAGGGAGATGATAGTGATGATGAATCAGATGAAGATGATATTGATTTGTTTACAAATTTCACATCAGAAGATGAAGAGGAAGAAGAAGCTAAATATGAAGATTTCTTTGATCCACCAAATGATGAAGTTTCAGACAAAAAGAAGGTCAAATTTAAAGAAAGGACTGATGAAGATGAATCAGATGACAGAGATGAAAGCGATAATGATGATGATGATGATGCTGTACAAGGACAGAAGTCTGGCTTGTTTGACAGTGGTAGTGAAGGTGAAGATGTGAATGATATATTTGGGGGACCTAAACCTCGTGATAAGTCAAACTTTGAAAAAAGACAGGAAAAGCTGAAAGAAAAAATTAAGAAAATGGAAGATGCCAGTTTGGAAGCAAAGACATGGCAATTAACAGGGGAGACAACTGCTACTACCAGACCAGAAAATAGTTTATTAGAGGAGCATTTGATGTTTGATCATATTGCCAAAATACCCAAAGTGATCACAGAGGAGACCACAGTAGACATAGAAACTATGATTAAACAGAGGATAAAAGACAAGGCTTGGGATGATGTAGAGAGAAAAGTTAAACCAAAAGAAAACCCATTTGAGTACAAGAAGAGGATTGTGCTAGACCAGGAAAAAAGTAAACAAAGTCTTGGAGAAATCTATGAACAGGAATATTTAAAACAACAACAGGAAGAAGAGGAGGAGAAAACTGATCCTGACCATGATGAAATCAAGAAAATGATGCAGTCCTTATTTGTTAAATTAGATGCATTATCAAACTTCCATTACACTCCAAAGCCTGCAGCACCAGAGATTAAGATAGTTTCTAACATGCCAACTATCACCATGGAAGAAGTCGCACCAGTCAGTGTTAGTGAGAACCAGATACTGGCTCCTGAAGAGATTAAGGAAAAGATGAAAGGGGAATTAAAAGCACAGACAGAAAAAACTGAAACTGACAGAAAAAGAGAAAGAAGAGTGAAGAAATATATGAAAAGGAAAAGACAGAAAGAAAGAGCTCGTAGAGAAAAACTTGTTCAGAAATTGAATCCTGGACTTGGAAATAAATACAGTAAAGAAAAGGCCATTAAAGAATTAGAAAAACAGAGTAAAGCAGGAAAAGGTGTTACAATGGTCCAGAATACTGACCAGAAGAAGACAAAATCATCGCTGACGTCATCAAAGTCATTCTTTACACAATTACAAGAAGAGGTGACAACACAAATAAAATCTAAAAAAGCTGACAAAAGAAATATAGATAAATCACACACTGTACCATCAAAAAAATTAAAATTATAG

Transcript

Bpl_scaf_39147-3.7

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04006	Mpp10	Mpp10 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012173	Family	U3 small nucleolar ribonucleoprotein complex, subunit Mpp10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17039	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005732	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034457	Cellular Component	Mpp10 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14559	MPP10; U3 small nucleolar RNA-associated protein MPP10	-	Ribosome biogenesis in eukaryotes	ko03008	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_39147-3.7 global RNA-seq network