Detailed information of Bpl_scaf_38816-1.14 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_38816-1.14VINCULINBpl_scaf_38816209119226032-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01044VinculinVinculin familyFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000633Conserved_siteVinculin, conserved siteInterproscan
IPR006077FamilyVinculin/alpha-cateninInterproscan
IPR017997FamilyVinculinInterproscan
IPR036723Homologous_superfamilyAlpha-catenin/vinculin-like superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR46180VINCULINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003779Molecular Functionactin bindingInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005856Cellular ComponentcytoskeletonInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0005912Cellular Componentadherens junctionInterproscan
GO:0005925Cellular Componentfocal adhesionInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0008013Molecular Functionbeta-catenin bindingInterproscan
GO:0015629Cellular Componentactin cytoskeletonInterproscan
GO:0044291Cellular Componentcell-cell contact zoneInterproscan
GO:0045294Molecular Functionalpha-catenin bindingInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K05700VCL; vinculin-Focal adhesion ko04510PMID: 28812709
Adherens junction ko04520PMID: 28812709
Regulation of actin cytoskeleton ko04810PMID: 28812709
Leukocyte transendothelial migration ko04670PMID: 28812709
Shigellosis ko05131PMID: 28812709
Bacterial invasion of epithelial cells ko05100PMID: 28812709
Amoebiasis ko05146PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_38816-1.14 global RNA-seq network
TOP