Gene detail

Detailed information of Bpl_scaf_38804-0.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38804-0.3	FATTY ACID HYDROXYLASE	Bpl_scaf_38804	78391	88848	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_38804-0.3

AATTTCAAAGCTGACTATTATTTTTATCGGTAATGTCATAATGTGTTTGATATCACACTGACAGATAATTTTTAGTATCACATTTAGTTAGTTGATTCTGAAAATATCTCTCAGCGATGAGATCAAAGGAAAAATATATAAATTACTAATAAACGCAAATAACATCAAATCTTGCAGGGCTTCAATAATTTTCTAGTCTACTAGTACTTCACTCTTTACAGGTGGTACTTTTTCTTAAAATTTGAAAAATTTTCATGAATATCTTATGCAACACTCTTTGCAATTAGGAGGTACCAATTACCATTTTAAGTGGGTAAAAGTAGCTGGTACCGCCCCTTATTGAAAGGTCTGACCTTCATTGAAAACTCCCATTTTATTTTGTCTTCGTTTATTTTGATTTTAGTTTTTTGAATTTTCTTTTTTACAGGATGGTTTAATAGACTGGTCAAAGCCTATCATTTGGCAGGTTCCAAAGCTTGGTGATAAGTATTTTGACTGGGTTCATGTTCCAGTAGATACGCACATGAGACTCTTCCAATCTGATTTTGTAGAATATTTCTCACAATGTGCATGGTACATTGTGCCTATGTTTTGGATTCCTGTGATGTTGGTATTAATTACATGGTCATATACAGCACTAGCAGAAAACCCAGTAGACTGGCCTGCAAATTCTTCCTTTGGGTTTACTATAAATGTTATTATATTATTTGTGATTGGTTTTATGCTGTGGACGTTAGAAGAATACATTATTCACCGCTGGCTGTTTCATCTCAAACCTCCATCAGGATATCCATCTCTTATATGGTGCCACTTTTTGTTACATGGTCAACATCATAAGACACCTATGGATAGTAAGCGTCTAGTTTTTCCTCCAATTCCTGCCATATGTCTGGGTATTATTGTTTACAGTTTCTATTGTTTGTTTGTTCCACCCTCAGCAGCACTGATGATATTTTCAGGAACAATTGCTGGTTATTTAGCTTACGATATGATTCACTATTATCTACATCACGGTGTGCCAGCCACACAATATTTTAAATCCTTAAAGAGATACCATGTTAGGCACCATTTTGAAAATCAACAGAAAGGTTTTGGAATTTCTTCCAAGTTGTGGGACTATCCATTCCATACTTTGATCGAGGATTAAAATTGAGGCCTTTTGAACAGATTCTATGTCACTTGATATGAAAAGACGAGGGTGTGGGAAGATCATCCTCATACAAAAAAAAAGACACCGGTGTAGAAAGATTGTCATACAAAAACAATATATGTATAAATATCTGTATAAGGTGTATACCACTATACAAAATTTAGCAAAAAAAAATCATAATAAGACCATTTATATTTCTAACTGTTTGAACAATGTTTGTATCTGAAATTTAGGTCAATCATTGCAGGATGTGCATCAATTTTATTTTACCATAATTGCCTGTGTATGGTATGCATAAGTGTATTATACACTCCCCTTTTCAATGTATTTTTTTTCCGCTCATCTCAAAAAAAGTATGTAACGTTTCTGATTTCTTGTTTATCATACTCACACAAGCAGGTCTTGTGGCCATAAAACTGACTACGATATCATACTCGTACTCCAGGGTCGTCATTCAAGAACACTGTACAAAACTTGTGCTGGAGAGTGTTATGACAATAAGGTCTAATCATACATTTTGCTTAGCAAAAAACAGTGAGTACTGTGCTCTGCTGATTATGGTAAAAAATTATTTTTTATGGGAGTCATATTTGGTTTTCTTTGTGTGTCTGTCAGTTGCCTATTCAACAAGAGATTGATTGGCTAAAATAAAACGTGATGATGGGAGAACATTAAATGGTCCATTATACAGATATCAACTTGTAAGATTGACATTTTTGTATATGTAGAAGTAATAGTGTTTAAGCTCAATGTTTATGTGGTAAATCTAGTCTGCTGTCTCAAATGTTTAATAAGTTTTCCATGTAGAATATTAAGCCTTGTGAAAAATAAATCCCATTTTCCTCAACCTATGATAACCTACCAAATATGAATCTGTGGCTTGACAAGGCTTAATTTGTCTAATTTACCATTTTTGTAAGGGATACCTTTACTATTTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04116	FA_hydroxylase	Fatty acid hydroxylase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006694	Domain	Fatty acid hydroxylase	Interproscan
IPR014430	Family	Sterol desaturase Scs7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12863	FATTY ACID HYDROXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005506	Molecular Function	iron ion binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0008610	Biological Process	lipid biosynthetic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0080132	Molecular Function	fatty acid 2-hydroxylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19703	FA2H, SCS7; 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase	EC:1.14.18.6	Non-coding RNAs	ko03100	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38804-0.3 global RNA-seq network