Gene detail

Detailed information of Bpl_scaf_38799-1.11 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38799-1.11	PR DOMAIN ZINC FINGER PROTEIN	Bpl_scaf_38799	194429	222763	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_38799-1.11

ATGAATGCTACTGTAACGGAAATTCTTAACAAATCACGAACATTGAAATCTTTACACTTATCAGACGATTGTGTTTCCAGTTCGGCGTTCAATGGTGTAACAAACTATCCGGAATTAGATGAGTTAACAATCAAATCGGAACATTTCACAGACGAAGGACTAGATTGTGTAACGAAACATTGTAAACATCTAAAGGTGATAAATATCCAACGTTGTAATATAATAACAGACGCAGGTATAAGTTATGTCGCAACCAATTGTCCACTTCTTCAGAAACTTTCAATGGGAAAAATGTTTCCGAAACAACATACAGGAATTTCTAGTCATGGTTTGGTTAGATTGTCTCAAGGGTGTCCTCGGCTTACATATCTATCTGCCACCGGATGTACGAAAATATATGATGATGGTGTCATGTCGGTTGCCATTTCATGCAGGATTTTAACTGTGATAATATTAAAAGGGTGTTCAGAAATAACTGATGTTTCTGTGAATGCCATAGCAACAAATTGTTCTCTATTATGTAAAGTGGATCTGACAGGATGTGTTCGTATAACATTACAAGCAATAATTCAGTTGATCACTTTTTGTAAACAATTGAAGATCTTGATTCTTGCGTTCTGTTACGGATTAGGAGAATATCAACAGATAACAAACAATTCGTCCGATCCTGAACTAACTCTTGTTAAGACAAGAAGGCGAAAATATAAATCAACGAAAAGTAACACACTGGAAAGTTACAGTAGTGAGAGACCAAATATGATGCCATATATACAGCAACATTTCTTGTCTCCAATTCAAAGCATGCAGATGGAAAGATTACGATATGGAGGTCGGGGGTTTCCATTCTCTATACCAATGATCCCCCAACAGATTCCTCCATCAGCTACATCACCACCAGAACGATCTCCGGTCCCCCAAACACGGTTTTACAACCCAAGACTAGTACCACCATTAGGCATACCAACATTTAGCTTTAGCCAAGAAGAGGTCGACAGTGTGCTTTATGGATACACGAAAAACAAAACAGAGAGGTGTAATGGCCATGCTTTATCTGGCATAAGAAGTTCTGATCTAAGCCATGGTATAGATCGTATTTTAACAGGAAATAGTTCTACTAGGTCAGAAGGTTCACCACCTATCCCCAACATTAAACCTTTAGATCTTTCAGGTTTAGAGGTCCCAGAAGGTGTGTCAGTTTTTCAAACATTGTTTGCTGGTTCTATACATTATGGAGTTTTCTGCACACAAACTGTAATATCAAGAGGGACAAAGTTTGGACCTTTCAAGGGTAGAACAGTGAACACAAGTGAAGTCAAAACTAACGACGATAACTCTTATATGTGGGAGATCTTCCAAGAAGGCAAGCTAAGTCACTTTGTGGACGGACGAGGACCAACTGGTGGGTGGATGTCATTTGTAAACTGTGCAAGGTATGCACAGGAACAGAACTTAATCGCTATCCAAGTTGACGGAGATATATTCTATGAGGCTTGTAAAGATATTCCGAATGGCACAGAACTACTTGTGTGGTATGGAGAATGCTATCTACAATTTATGGGCGTACCCGTTTCCTTAAAAGAAATGGCAGATGGAGGTGTACCCGAAGAAACAAATTCAAGCGAAGGTTTCACATGTGAACGATGTGGGAAAGTGTTCGCATACAAGTATTACAGAGATAAACATTTAAAGTACACACGGTGTGTTGACCAAGGCGACAGAAAGTTTCCATGTCATTTATGTACCAGATCATTTGAGAAGAGGGATAGATTGAGAATTCACATACTTCACGTACACGAGAAGCACAGACCCCATAAATGTGTTGTGTGTGCTAAAAGCTTCAGTCAGTCTTCGAGCCTCAATAAACATATGAGGGTTCACAGTGGAGAAAGGCCGTACAAGTGTGTTTATTGTAATAAAGCTTTCACAGCATCTAGTATCCTGCGCACACACATACGTCAGCATTCTGGAGAAAAACCATTCAAG

Transcript

Bpl_scaf_38799-1.11

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF21549	PRDM2_PR	PR domain zinc finger protein 2, PR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR044408	Domain	PRDM14, PR/SET domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR050331	Family	Zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16515	PR DOMAIN ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0034972	Biological Process	obsolete histone H3-R26 methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_38799-1.11 global RNA-seq network