Gene detail

Detailed information of Bpl_scaf_38784-7.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38784-7.10	METHIONYL-TRNA SYNTHETASE	Bpl_scaf_38784	770078	786906	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_38784-7.10

GTTTATCAACAGTGTGAAGGAAAATGCTGACAAGACGACTGCTTGCGTGGAAGTTAAACAGAATTGCAAAAAGAGGATCCTTCCTTAAAAACATAAGGCTATATACTTGCAATAATTATTTTGTGACGACTCCAATATTTTATGTAAATGCCGCACCTCACATTGGACATTTGTATACAGCAGTTTTAGCTGATAGTGTGGCTAGGTGGCATGTGTTAAAGGGAGGTCGTGTCACTTTTACAACAGGAACGGATGAACATGGATTAAAGATACAACAAGCAGCAGAAAAGTTACAGATGAAACCCCAATCACACTGTGATCAAATCTCTAATAAATTTAAGGAATTGTTTTCATTAGCAGATATTCAGTATACAGACTTTATAAGGACAACAGAAGTCAGACATAAACATTCAGTTAGTAAATTCTGGGAAACATTACAGAAGAATGGTTACATATATAAAGGTAGTTATGAAGGATGGTATTGTGTGTCAGATGAAGCCTTCCTGTCTGAGAATGATGTCACTGAGATAACAGAACAAGATGGCAGCATAGTCAAGGTTGCTATTGACAGTCAACAGCCAGTCATTTGGACCAAAGAAGAAAATTATATGTTTAGATTGTCAGCATTTAAAGAAGGATTGATGAAATGGATAGATGAAGGAGTGATAAAACCACAGAAGTTTGAAGGTACAGTAAGACAAATGGTTGACGATTTACAAGATTTGTCTGTGTCTCGTAAAAGGGACCGCCTCAACTGGGGAATACCTGTACCTGGAGATGATACACAAACAATTTATGTATGGTTAGATGCTTTAGTAAATTACCTCACAGTTTCTGATTATCCTGACTTATCACATGACTGGCCACCTGACTGTCATGTGGTTGGAAAAGATATTCTTAGATTTCATGCTGTATACTGGCCAGCATTTCTAATGGCAGCCAATCTACCATTACCAAAAAGAATACAGTGCCATTCTCATTGGTTGATTGACAATTGTAAAATGTCAAAAAGCAGAGGAAATGTTGTTGACCCCATAGATAGGATAGACAGATATACAGAGGATGGATTGAGGTACTTCTTATTAAAGGAGGGTGTACCTCATTCTGATGGTAATTATAATGATACCAAGGCAGTAGATTATCTGAACAATGATCTAAGCAATACATTAGGAAATCTTCTGAGTCGCTGTACAAGTAGAAAAATAAACTCAAATATGGGTCAGATATTTCCGGCTCTTGATAGAGAAATTCTAGAATGGAAATTTTCTCAAAATGACATAGAAATACATAGTTGATGATCTATACAAAGAATATGATCTATATAAAGTAATAGACTGCACCCAGTCTTACTTACGATGGGCCAATAGACTTCTACAGGACCATGAACCATGGCAACTCACCAAAACTATCGATACGTTTGGACATCTGAAATGTTTATTACATATTGTTTTTGAAACATTACGTGTAAATGGAATTATTCTGCAACCAATTATACCGAAAGTAAGCAGTGTATTATTAGACAGATTAGGAATTTCAAAAGAAGAACGCATGGTGAAACATATAAGTTTAAAAAGCAACGAACAACGAGATACAAAATTGGGACAATCAATAAATGTTCTGTTTCCAAGGATACAGCAGGATGATTGATTGATTGATGTTTGTTATTTTTACAGCATAATTCTGTGCCAACATTCACTGTGTAATAATTTCAGAAGGGTCAGTCAACTAGAAGTTATTGCATGGAAACAATTGTCTACAAACAGATGATGCATATATAATACAACAACCACAGTAGCAACAGATCTATAAAGTAATATGACCAATTTTTGCAGTCATATAAAAATGCTCAATATGAAGTTAAATGGTCAAAAGTTAGAGCATCAGTATTCCTGAACAAAGATCACAACACCCAAAAATGGCTGCCAGGGCCTATTCTTTGTTTTATTTGACTGAAACTTAAAAAAATCATTTCTGAAAGAACAAGTTAAAATGATTTGTTGGTTGGTACAAATAAAGTATGCAAGTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09334	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR014758	Family	Methionyl-tRNA synthetase	Interproscan
IPR015413	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR023457	Family	Methionine-tRNA synthetase, type 2	Interproscan
IPR033911	Domain	Methioninyl-tRNA synthetase core domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43326	METHIONYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004825	Molecular Function	methionine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006431	Biological Process	methionyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01874	MARS, metG; methionyl-tRNA synthetase	EC:6.1.1.10	Selenocompound metabolism	ko00450	PMID: 28812709
K01874	MARS, metG; methionyl-tRNA synthetase	EC:6.1.1.10	Aminoacyl-tRNA biosynthesis	ko00970	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38784-7.10 global RNA-seq network