Gene detail

Detailed information of Bpl_scaf_38716-4.0 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38716-4.0	SULFATE TRANSPORTER	Bpl_scaf_38716	399401	401935	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_38716-4.0

ATGAGCCGGTCTATGTCTGTTGTTGATGGCATGGCAGTTGCATCAGCAGGAACCGGATATGGACAAAATAAAGGAAGACGTTTCTCTTGTCCCTCTGGTGGATTGGGTCAAGAAAGCACTGTTTTTGTCAAGAGACAACCATTTACACAAGTTGCATTTGACGAAATTCATTTAAAGGAAGACCATGATGAATCTACCTCGATTTCTACGAAATTAAAGGAAAATATTTATTGTTCCAAGAAGAGAGCGTGGAAGATAATCTCTACTTATCTGCCAATCATCAAGGTACTAAGATACTACAACATACGAGAGAGTATAGTAAATGACATCTTGGCTGGGATAACTATAGGAATATTGCACATACCACAAGCTTTGGCATTTGGACTCCTTACATCAGTGAAAGTAGAAAATGGATTATATACGTCGGTATGGCCCGTTTTGTTGTATGTTATATTTGGAACGTCAGCTCATGTGTCTATGGGAACCAGTGCTGTTATTTGTATCGTGACTGCAAGTGTCGTCGATCGGCAAGCTGAGAACTTTAAGGCTACGTTTTCTCTCAATATGACGACGAACTCAACTGCATTGAATTGGGAAGACATACCGGAGTTCATGGACTATAAAGAAAATGTAGCACTATGTGTGGCGTTTCTGAGCGGATTAATCCTACTGTTCATGGGTGTTCTGCGTCTTGGCTTCATCACAGCTTATTTGTCAGAATCGTTCTTCAACGCGTTCACTTCTGGTGCTGCAGTTCATATTGCAACCAGCCAATTACCGGCTTTACTCGGAATCAGTGTCAAGAGATTTGGTGGAGCTTTCAAGATAATTTATACATACAAAGAAATATTTTCAAACATTTCCAACATATCATGGCAGACACCTCTTGTAACAATTATCAGTATGGCAATTTTGCTATTTTTCAAGGAATTTATCAACGAAAAGTTTAAGAAAAAGCTTCCTTTACCGATACCCGTGGAGTTGTTGGTTGTAATTCTGGCAACAGTTATTTCATATGCCGCCAATCTAGCCGGAGAAGTCGCTGTTGTTGGGGAAATTCCAAGTACAATACCACCACCCCTCATTCCAGATCTCACTGGATTCGAAAACTATTTCGTTGACTGTTTCGTTCTTGCCATTTTGATTTTTGCCAATACCATTGCTATGGCCAAAATATGTGCCAAGAAGCACAACTACGAAATAGACGACAGTCAGGAGCTTATTGCCTATGGTATGTGTAATTTTGTCAGTTCTTTCTTCAAATGCTTCCCATCAGCAGTCGCACCACCTCGATCAATGATCGCTTCAGTAATGAATGTCAAATCTACACTAGCTGGTATATTCGTTACCATTTTGATGCTCCTCGTAATAATGGCCATGAGTGTGTTATTTGAACCATTGCCTAAAGCTTCACTTGCCGCCATCATTGTTGTAGCTTTAAAGGGACTGTTTATACAAATGGGAGATTGCAGAAAATTTTGGAGAATCAACAAATTTGATTTTATCATCTGGTTATTTACCATTTGCAGCGTTGTGTTCCTTGATATAGATTTTGGACTTGGTATAGGAGTCATTGTTTCTCTGATAACAGTTGTGTTCCAAACACAGTTTGCCCGCGGTTACCGTGTTGGCAGAACAATGAAAGAAAGTGCATTTGTTGAACACAAGAAATATAAAGACTCCATTGAATCAAATGGCGTTAAAATCTTCAAATTTCAATCAAATTTGTATTTTGCCAACGCCGAAATATTTAGAACCTTATTGTACAGAACCACCGTGAATCCCAGAAAATTATTGAAGTTTTTGAAAAAGCAAGAACTGAAGAACAAAAGAGAAGAAAAGCGTTTACAAAAACTTGGAATTGAACCTCCTAAGAAGGATATAAATGCATTATCAGAAGTGTCCATTATTCCTCTCAAAGGAGACGGCCGCAGGTCATCCAAGACGTCTGAAGTCAGTGTTTCATCTAATGGTTATAATGTGAAAAAGAATGGCTCCAGCACAAATTTAGTACCGGGAGACAATCCTGCATTCTCATTGGACGAGGTTGCTTTACAGAATAACGGGATAGCAAGCCAGAACAATTCAATGAAACAACTAAATGTACTTCCCAGAACATTAAGCATTGCTTCTAATTTGACAAGTCTCGCAGACGATGATGAAGTAGACCCCGAAGATGGGGAGGAATACGTTACAGACGACAAAATCAGACGCATGCGCAGAACTCATCATATCATTATAGACTGTTCTACAGTAAATTATATGGACAGCTCAGGGGCGAATGTTTTGGGACACATTTCTTCAGAATATGAGCATGTGAATATAAAGCTCTTCCTAACTGGATGTTCAGCTGATATTCGTCGTACAATGGCACATGCCGAAACATACCAAAAAATACCAGAGCATCACATTTTCTTGGAGCTGCATGACGCTATTGCAGTTGCCAGGAGCCAGTCCATTGGTCCATTACCACGTTCTTTGGAGGACTTCACATATGACGAAGCCGCAGAAGAATCATACGTCACAAATATGTAA

Transcript

Bpl_scaf_38716-4.0

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00916	Sulfate_transp	Sulfate permease family	Family	Interproscan
PF01740	STAS	STAS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001902	Family	SLC26A/SulP transporter	Interproscan
IPR002645	Domain	STAS domain	Interproscan
IPR011547	Domain	SLC26A/SulP transporter domain	Interproscan
IPR036513	Homologous_superfamily	STAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11814	SULFATE TRANSPORTER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0015106	Molecular Function	bicarbonate transmembrane transporter activity	Interproscan
GO:0015108	Molecular Function	chloride transmembrane transporter activity	Interproscan
GO:0015116	Molecular Function	sulfate transmembrane transporter activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019531	Molecular Function	oxalate transmembrane transporter activity	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14703	SLC26A5, PRES; solute carrier family 26, member 5	-	Transporters	ko02000	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38716-4.0 global RNA-seq network