Gene detail

Detailed information of Bpl_scaf_38703-3.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38703-3.2	UBIQUITIN-CONJUGATING ENZYME E2	Bpl_scaf_38703	340306	358198	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_38703-3.2

CTTCCGGAACAAGCACTGAAGTTGAAAAACATTGAACTGTTACTCATTTAGCATTCATTGACCCCTTATCCGTAATTTATGTTACACCTACTGTATTGGTAACATGGCAAACATAGCTGCTGCTCGTATACAAAGAGAATTTAAAGAAGTTGTTAAAAGTGAAGAGGTGGAAAGATGTAAAATAAAGGTGGCTTTAAAAAATGATATGTATAATGAATTGGAAGGTACAATAGCTGGACCTCCTGATACTCCTTATGCTGGTGGAACATTTAAATTGGAAATAAAAATACCAGAAACGTATCCATTTAATCCTCCAAAGGTAAAATTTACAACAAAAATATGGCACCCAAATATAAGTTCTGTTACTGGAGCTATTTGTTTAGATATTCTTAAAGATCAATGGGCTGCAGCGATGACATTAAGGACAGTTTTATTATCGTTACAAGCATTATTAGCGGCAGCAGAACCGGATGACCCGCAGGATGCAGTTGTAGCTAAACAATATAAAGAATGTCAAGACATATTTGTAAAAACAGCTAAACATTGGACGAATATATATGCCGGTGGTCCACATAGAGAATTGGATTTAGAGAATAAAATAACACAAGTAATGGGGATGGGATTTGATGAGGGTAGAGCTCGTGTAGCATTATCATCACATAATTGGGACATAGAAAGAGCCACAGAGAACTTGCTCAGCTAATATTTGTGTTTTATAGACATTTAACTAATCTTCGTCCATCGTTATTTATGTTGATGAAACACATTTGTGATATCGTTATAACGGAGGGTAGGATGAGCTTGTGTTAGGAATGTATTAAGTTTTAAATGATGAAGTCACAACCTATGTTAACTTTCCTGTTATTAAATGGAATACTATTCCAGTGTTCTAGCCAGGATCTGAAAATAGAGCGGAACATGTGGGTTAATTTAGCATGCTAAGTTGTTGTTGAATAGGACATCCACACTGCTGTTCATATTGTTACCATGGATATTATACATGTATTCTAATTTTACTTTTGTGGGTGGCAAGTAACTACAAAATAAAATACTGAGCACGAAAATTCATCTTGATAAAGGGAAATAATTAGTAAAGTATTAAAACGGCAAAATCATGTGACAACAAATATTTCATTTTCAATCAATCCATGAAAATTGATTTCAACAAAAATAAAAACAAATTGAAGGTGTGAAGATTATTACATGAAAAGTAGTCCTTTACCATCAGTCATTCAATTAATATACATTTGGTTATAGAATTATGTTTTGATAGGAGTAATCTTATAATGGTCAAAATGGTTCCTGTTTAAGCAATAACAACAGAAAGGACAAAGAATTTGAACATAATTTTCTTTATCTGAACTGAATAAAAATTCAGAGTATAATTTTGTAATAACTAGAAAATTTACACGTTACAACATTAGAATATTGTATAGATTATGAGAAAATTATGTTATTTTCATTGAAATTTGCATGAAAAGGTAATTTTTTTTCTAAATTAATGGAAATAACTGTATAAGATCATGTAAGATTTATATTATCAGGAATGTGCAAATGGTCTATAGTTAGTAAACATACATGTGATGTAACTGTGAGGTGAATAAAAGCTATAAAAGTACTGTTCCTTCACTTAATTCTTTTTCTAGATGGATATAAAGATTTTTTCTTGTGTTCATTAAAATCTACATGCCTTGTAGACATGCAAATCTTTATTATGAAAACAGAGTTTAAATAGTGATGGTCAACAATTCCATGAATATCAACTAAACGAACAATGATTTCTAATTGATGATTTCACAGAAATGCCAAGCATGTTGTTCTAGACTGTAAGAAAATTGGTAGCATCTGGGGACATTCTGCTTTCTTTTTCTATCTTTTCACCTCTTGATGATCAACAATTGGATTACATGAAAATTTTATGTATGAAATTTTAAAATTTTCTTTAAAAATTATTAGGTTTTAAATTTTAAATAAGGAAAAATCAGGTTTATTAGAATGTTGATGTCTGACAGGCTAGCACTAAAATATTTTATGAAATTGGGCCAAGCTGTATCTCAGTAATATCTGGACACACCTGAATATAACTTAAGGGTGACTATATTAAGATTCCCAAATTTGTGAAATTCTACGATTTCAAATATAGTCACAATGACTTGAAAAAACATGACTGTTATTAAGATTCCCAAATTTGTGAAAATCTATTATTTCAAATATGACCTCCAAGATATGGATAAAACATGGCTGCCAATATAATGTTAAAGTTTTGGTACAAATGACATAATTTGAGGCAGAACTTGTTCGTGTTAAGGCCCAGTACTTTCATGTGTTTTTTTTTCTGTCTGTACATGCATTGGTTTCGGAGGGGGCAGTCATGGTCGTGATCGTACGGTAGTTGGATTTATAACTATCTATGCAATCTCCACTAAAGTTGTGAGTTTGAACCCCATTCATGGCGAGGTGTACTGAATACAACATTATGTGATCAAGTTTGTCAGTGACTTACGGCAGGTCGGTGGTTTTCTCCTGGCACTCCAGTGGCCTCCACCAATAAAACTGACCACCACGCTATAACTGAAATATTGTTGAAAGTGGTGTTAAATACCATAACCCTAACTATCTTTCAGGAATTTTAACACAATGATCCTTAGAATGGATTAAAGGTTGGCATTTATTTGTAAGGATTATAGATTTTTCCTCTCAACACATCACAACACCTATTTAAATCTGGAAAAATAAATTCCTCGAGTTTTAATTTTCTTTGTGATATTGTAAATGTTGTGATAATTTCTTTATAGGTTTGTGGCTTTACTTGATTGTATTACATTGCTCAGTTCCTACCCTCCATAATATCACCTCATGTATGTTTTACTTTTATCACATGATCTAAAAAGTCATGTGA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E2\|UBC\|UBC
Ubiquitin Family	UBD\|Alpha-Helix\|UBA
Ubiquitin Family	UBD\|UBC-like\|UBC
Ubiquitin Family	UBD\|UBC-like\|UEV
Ubiquitin Family	E2\|UEV\|UEV

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000608	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR023313	Active_site	Ubiquitin-conjugating enzyme, active site	Interproscan
IPR042614	Domain	Ubiquitin-conjugating enzyme E2-22kDa (UbcD4) , UBA domain	Interproscan
IPR050113	Family	Ubiquitin-conjugating enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24067	UBIQUITIN-CONJUGATING ENZYME E2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04649	HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2)	EC:2.3.2.23	Ubiquitin mediated proteolysis	ko04120	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38703-3.2 global RNA-seq network