Gene detail

Detailed information of Bpl_scaf_38390-2.24 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38390-2.24	SH3YL1 PROTEIN	Bpl_scaf_38390	173319	186021	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_38390-2.24

GCAGTTCGTATGCGCTTTGGCTTATGAAGCGTTTTGGCTTATGAGGCCACAGGCTGGGTCTTTTTCGGGTCATTGCATCATTATTTTTCTTCTGATATTGTCTCGTTGAACCCTGCAGTGTCAGATCAATCTGGGAGTACTATTGTTATATCACTCCTAAGTCCTTGGTCAGATTATTATTTGAATCTTTCATAAAGTTTGGCGGCTGTCAACTTTTTTTTTCTTCAGAAAAACATGTATTGCCCATTTTCCGGGTTTCCCTTTGAAGATTTCGCATATTTTAACAATCCAGAATTATTGTAAAATTGTTAAAATGAGTTGTGGTCTTGTATAGCACAAATTTAGAAAATCATACCATTTTTACGTGTACACACTACACAGTTTACATAAGATGTGTCAAATGTGTGTACATATAAGAGCTGTTTGTGGTCACATGACATGGTACAAAACCGGATGTAAACAAACTGTGATTGAGAGCAGTATTTACACACTGATTTTCATTCATCACGAAGCTCTACGTTATTAGAAAACAATTAACACACTTGGTTTGTCGGTGTTAATTACAGACAAAGAACCATGCAAGTTGGCAGTTAATAAGCAACAAAATACAAATTATTCATTTTTACCTGTCACTAGTAAGAATTTATTATTTTGGCAATGGTTGGATAAATTTTGATATTACTAATTGGGATGTCATGAGCAACCTGTACAATGATCAACACTCCAATACCACACAGTTTAAAGTCTGAGGCAAAGAAAGCTGCAAAGATACTTAAAGATTTTACTGTACCATCAGCTAAGGCTGGACCTGATAAACTTATACCAAATGGTGTATTATTAAAGGCAAAAGGTTTGGCTGTATTAACTGTAGTTAGAGCTGGGTTTTTGGTAACAGCCAGAGGAGGAAGTGGAATCGTCATTGCTAAAATAAACGATGATTTAGGTGAAGCAGAATGGTCAGCCCCCTCAGCTATTGGTATTGCTGGAATAGGAGGAGGGTTTGAGATAGGTGCAGAGGTTACAGACTTTGTCATACTGTTGATGAGTAGAAGCTCAGTTGAAGCCTTCTCTAAGGGGGGAAATTTAACCCTTGGAGGTAATTTCTCTATAGCAGCAGGTCCACTTGGTAGGAATATTGAAGCAGATGTAGCTGTTAGGAGTCCAGCAGCCATATACACTTACTCTAAAACAAAGGGATTGTTCGCTGGCATCTCTAGATTTTCTTTTAAATCAAAAGAAGATAAGTCAAGTAAAAGAGATAAAAGTCCACATTCACCGCATTCTGTCAGGAGGAGTCAAACTGTCGTAGAAAAAAGTGATATTATCACAGTGATGACACAAACAACATCAGATTGTGATTGGTGGGAAGGAGGTTGTCATGGAAACATTGGTATATTTCCATCCAATTATGTAAAGGTGAACTAAAAACAAATTTCCGTGGATATTAAAGACAATTATGAAACATTAATGTAAAAGACAGGAAGCCGTGAAAGACATGTTCAATATTTTTGTGTGTCAAATCGATTATAAAATTAAGAAAGTTGAAATTAATTGCTCAATTAATCATGTGGTTGTAGAGTCATATTTTGGCTGCCATGTTTTTTTTTTCATGTTTAACATTCCAGTTAGTATTAAAAAAACATAAATTCACCATAGCTGGAGGTGACATAAAATGAAAGTTGTTTATAAACTGATACACGAAAAATGTGTCACAAATTAGTCACATTATTTTATCCATTTAGTTTTTATGAACAAGTTTAAGATAAAGTTATTTTGTTAAAGATAAGTTTATTGATGTGAAAAAAAAATATAATTTACATGCACACAAATGAAATGTTGAATTGGTATTTTTTTTATCAATAATCTACACAAAATATTGATCTTAGAAACAAACAGTTTGTGAGCCTATATTTACTGCATAAAATCTTGAAATATAAATAATTTCATAAGATGAAATATATATGTAAGACTCAGATCAACGTCCAGCCTCTAATCGACATCCAGTGCTTAAATCCATGTCCGATTTCTACGTCACAGACATCTGTACCTGATCTATGTCCATTTTCAAATTCCCAAATTAGCATTCAATTCTCAAATCTATGATCGTTTCTCACTTTCTCAAATCAATATCCAATGACATCACTGACGTATGCCCTAACCCTAACCAATAAATCGGCCATAGATCTGAGCATTTGGAAAGGACACTGATTTGAGAATACCTTTAAATCGGAACATGATTTGAGATAATTTGAGTCCGGATGCTGATCTGATATGTGTTTTAATTAGGAACATATTGATATGGAATCATGGATTTAATTTTTTTTTCATGTTTTTTGGGGGAAATTTGTTAATTTGATTGTTCTTAAATTTGTGGACATCAAATATTCTCCTGAGAGCTATGTGAATAATTCCAATAATCCAATTTTGTTTGGGTCTTGCATTAATGGCTTGCAATAACCACAGAGATAAACAAAAATAATACTGCACGAAGTACGCATATCCTTATAATTAATTTTTTATTTCCATTCCAATTTTTGTTATTTATTTTGTAATAAATT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04366	Ysc84	Las17-binding protein actin regulator	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007461	Domain	Ysc84 actin-binding domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR051702	Family	SH3 domain-containing protein YSC84-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15629	SH3YL1 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0032587	Cellular Component	ruffle membrane	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:1900027	Biological Process	regulation of ruffle assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_38390-2.24 global RNA-seq network