| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_3829-4.57 | SUPPRESSOR OF TY 4 | Bpl_scaf_3829 | 501744 | 506876 | + |
| CDS | |||||
| Bpl_scaf_3829-4.57 | |||||
| Transcript |
| Bpl_scaf_3829-4.57 |
| Protein |
| Bpl_scaf_3829-4.57 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF06093 | Spt4 | Spt4/RpoE2 zinc finger | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR009287 | Family | Transcription initiation Spt4 | Interproscan |
| IPR022800 | Domain | Spt4/RpoE2 zinc finger | Interproscan |
| IPR029040 | Homologous_superfamily | RNA polymerase subunit RPABC4/transcription elongation factor Spt4 | Interproscan |
| IPR038510 | Homologous_superfamily | Spt4 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12882 | SUPPRESSOR OF TY 4 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000993 | Molecular Function | RNA polymerase II complex binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006325 | Biological Process | chromatin organization | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0032044 | Cellular Component | DSIF complex | Interproscan |
| GO:0034243 | Biological Process | regulation of transcription elongation by RNA polymerase II | Interproscan |
| GO:0140673 | Biological Process | transcription elongation-coupled chromatin remodeling | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K15171 | SUPT4H1, SPT4; transcription elongation factor SPT4 | - | Viral life cycle - HIV-1 | ko03250 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_3829-4.57 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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