Gene detail

Detailed information of Bpl_scaf_3829-1.2 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_3829-1.2	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3	Bpl_scaf_3829	145606	167027	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_3829-1.2

ATCCTAATGTCCGCCATAGTTTCACATTTTGCAGATCATGCCGGAGTTTTCTGAGAATATTTGACCCTTTGTTACTCGCTTTGAGAGTCAGAAACACTTGGTTTTCAATATAATAATCTTTATAATACATAGATGGTATATTTTCTAACGAAATAACGCTAAGATGGTGAAAAATACAGACGTTGAGATGAAGGAGACGCCAAGTCCTGGCAAAAACAAAAAGACTGACCCAAAGATTGAAGATGTTGCAATGGAGGATGTTGAAGCAGAAGAACCCAAGAAAGATCCTGATCTTTTGACACTTGAAGATATAAAAGAACATGTACGTCAGATAGAGAAGTCTGTATTATCTAAAGAACCCAGATACATGTCCAGAGTCATACGTAGTCTTGTGAATGTCAGACGACGTCTCAATCAAACCATTCTTAGAAAATTATTTCAAGGTTACATGATTACACAAGCAGTACAAAGAGACGAGTTGATTGCATTTCTTGATCAGCCCATGGAAGCAAATGGAATTGGGCCTACATTTAGACCAAAGTCAGGTAAAAGTGCAACAATACCTGTTATACCTGAGGTCGAAATCTACCTCCACCTGTTGTTAATTATACATCTGATTGACCTCAAGAAATATCCACAGGCTGTCTCATGTTCAGAAAAGTTGATGAGCAAGATTATCCCTTTAAACAGGAGGACGTTAGGACAGCTTGCTGCTAAATGTTATTTCTACCACTCTAGAGGTTATGAACTCACAAATCAACTTGATAAACTCAGATCATTTCTACACTCAAGATTAAGAACAGCAACATTAAGATCAGACTATGACGGTCAAGCCAGTCTGTTAAATCTATTGTTACGTAACTACCTGCACTTCAATCTCATAGAACAAGCAGATAAACTGGTATCAAAGTCAACTTTTCCTGATACAGCATCTAATAATGAATGGGCTAGATATTTGTATTATCTAGGCAGAATAAAAGCTGCACAGTTGGAATATTCAGATGCACATAAACATTTGTTACAAGCCTTAAGAAAAGCCCCAACACACGGAGCTGTAGGCTTTAAACAAACGGTTAATAAACTAGCCATTACTGTAGAATTACTATTAGGAGATATACCTGACAGACATTTATTTAGACAGCCTTCAATGAGGAAAACATTAGCTCCATACTTCCAATTAACACAAGCCGTCAGAATAGGAAATTTAGCTAGATTTAACGAGGTGCTGGCCAAATTCGGCTCAAAGTTTCAGGCAGAAGACACGTACACATTAATTATTCGTTTACGACACAATGTGATAAAGACTGGTGTGCGTATGATAAACGTGTCGTATTCTAAAATATCGTTGATGGATATTTCACAGAAACTAATGTTAGATAGCCCTGAAGATGCAGAGTATATTGTAGCAAAGGCAATACGAGATGGTGTAATAGAAGCTACAATAGATCATGAGAAAGGTTATGTACAGTCAAAAGAGATCAGTGATATTTATATGACTCGGGAACCCATGACTGCATTCCATCAACGAATCAGCTTCTGTTTAGATATTCACAATGCTTCAGTAAAGGCCATGAGATTTCCTCCTAAAGCTTACAACAAAGATCTGGAATCAGCAGAGGAACGAAGAGAACGTGAACAACAGGAATTAGAAAGTGCTAAAGAAATTGCAGATGAAGATTTTGATGGATTTCCGTGATTGAGAAATTTATTAGTTGTGACTCATTATTATCCTTCTTTGAAAAACTTACAGACTTCCTATATTGATGTATTTGTCAGTTGTTGAATTATAATACAGCAAAATTTAAGCGACTGCATTTTAAATTTTTGTAGAATTTTTGAATTTTTTTTTTAGAAGTTGAAGAGGTTATGTTACACACAGAGGACAATTTATATATGTATTTTCTGTCCTTTTAATTGTATGTTTTGTTAATTTATCAAAGTTTAATAATCATTGATTCTAGTTTCCATGGAAATCTGGAGTTAAAATATCATTTTCACAGAAATAGAATCTTTTTCATGAACATTCAGCCATAATCACTAGCATTTAATATACGAAAGATCATACCATATCATAAACATGTCTTTTTGTTCTTTAAATGACGGAAGTATTTTTCAAATAACCTATAGCTGCCACGATATAACTGAAATATTGTTGAAAGTGGTGTTAAACACCATAAACCATCAATATACTGGTGAAATAAATACTTTGTTTATCATATATTGTGTACACTTTGTTGAAATAGTACTGTAAAAGTGCTCATTCTAGGAATTAAAGACGGTTCCTAGAATTTAAAAATAAATAAAGATTGTACATAAAATATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399	PCI	PCI domain	Domain	Interproscan
PF08375	Rpn3_C	Proteasome regulatory subunit C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013586	Domain	26S proteasome regulatory subunit, C-terminal	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR050756	Family	COP9 signalosome complex subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10758	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000502	Cellular Component	proteasome complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0008541	Cellular Component	proteasome regulatory particle, lid subcomplex	Interproscan
GO:0030234	Molecular Function	enzyme regulator activity	Interproscan
GO:0042176	Biological Process	regulation of protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03033	PSMD3, RPN3; 26S proteasome regulatory subunit N3	-	Proteasome	ko03050	PMID: 28812709
K03033	PSMD3, RPN3; 26S proteasome regulatory subunit N3	-	Epstein-Barr virus infection	ko05169	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_3829-1.2 global RNA-seq network