Detailed information of Bpl_scaf_38288-11.23 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_38288-11.23DNA-DIRECTED RNA POLYMERASE II, IIIBpl_scaf_3828810790091086918-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00575S1S1 RNA binding domainDomainInterproscan
PF03876SHS2_Rpb7-NSHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR003029DomainS1 domainInterproscan
IPR005576DomainRNA polymerase Rpb7-like , N-terminalInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR036898Homologous_superfamilyRNA polymerase Rpb7-like, N-terminal domain superfamilyInterproscan
IPR045113FamilyRNA polymerase subunit Rpb7-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR12709DNA-DIRECTED RNA POLYMERASE II, IIIInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000291Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolyticInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0003727Molecular Functionsingle-stranded RNA bindingInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0006352Biological ProcessDNA-templated transcription initiationInterproscan
GO:0006367Biological Processtranscription initiation at RNA polymerase II promoterInterproscan
GO:0031369Molecular Functiontranslation initiation factor bindingInterproscan
GO:0045948Biological Processpositive regulation of translational initiationInterproscan
GO:0060213Biological Processpositive regulation of nuclear-transcribed mRNA poly(A) tail shorteningInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03015RPB7, POLR2G; DNA-directed RNA polymerase II subunit RPB7-Purine metabolism ko00230PMID: 28812709
Pyrimidine metabolism ko00240PMID: 28812709
RNA polymerase ko03020PMID: 28812709
Huntington's disease ko05016PMID: 28812709
Epstein-Barr virus infection ko05169PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_38288-11.23 global RNA-seq network
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