| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_38287-2.11 | THO COMPLEX SUBUNIT 1 | Bpl_scaf_38287 | 183098 | 228027 | - |
| CDS | |||||
| Bpl_scaf_38287-2.11 | |||||
| Transcript |
| Bpl_scaf_38287-2.11 |
| Protein |
| Bpl_scaf_38287-2.11 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity|RBR |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00531 | Death | Death domain | Domain | Interproscan |
| PF01485 | IBR | IBR domain, a half RING-finger domain | Domain | Interproscan |
| PF05773 | RWD | RWD domain | Domain | Interproscan |
| PF11957 | efThoc1 | THO complex subunit 1 transcription elongation factor | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000488 | Domain | Death domain | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR002867 | Domain | IBR domain | Interproscan |
| IPR006575 | Domain | RWD domain | Interproscan |
| IPR011029 | Homologous_superfamily | Death-like domain superfamily | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR016135 | Homologous_superfamily | Ubiquitin-conjugating enzyme/RWD-like | Interproscan |
| IPR017907 | Conserved_site | Zinc finger, RING-type, conserved site | Interproscan |
| IPR021861 | Family | THO complex, subunit THOC1 | Interproscan |
| IPR044066 | Domain | TRIAD supradomain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13265 | THO COMPLEX SUBUNIT 1 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000445 | Cellular Component | THO complex part of transcription export complex | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006406 | Biological Process | mRNA export from nucleus | Interproscan |
| GO:0007165 | Biological Process | signal transduction | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0032784 | Biological Process | regulation of DNA-templated transcription elongation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K12878 | THOC1; THO complex subunit 1 | - | Spliceosome | ko03040 | PMID: 28812709 |
| RNA transport | ko03013 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_38287-2.11 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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