Gene detail

Detailed information of Bpl_scaf_38266-1.1 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38266-1.1	OPSIN	Bpl_scaf_38266	160085	174851	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_38266-1.1

ATGCATGTACACGTGTTGAATTATCAGTTAGGATGTCAGTTGTATGGATTTATTGGTGGCTTGTTTGGTTTGATGTCAATAAACACACTGGCAGCTATCTCCATCGACAGATATATCAACATCGCCTATCCACTTACGTCAGTAATATTCATGACAAAAAGGAAATCCTTTTTGATGATAATACTGGTATGGTTATGGTCACTGATCTGGGCTGTACCACCCATATTCGGATGGGGAGCATATATTCCAGAGGGATTCCAAACGTCCTGTACTTTCGACTACCTTAGCACACGTTCCTATATTTTTGGGCTATACATTGGTGGTTTTGTTATTCCGCTTGGTATAATCATTGTATGTTATGCTATGATACTGCAAGCTATTCGAAATCATGATAAAGAAATGATTACAATGGCGAAGAAGTTGAAAGCAGACGACATTCGTGCAAACCATGAAAAATCCAGGACAGAAATCAGAATTGCGAAGATTGCCATGGGAATTGTTTTTCTCTACATTTTATCATGGAGTCCGTATGCAACAGTTGCACTTATTGGTCAATTTGGTCCTAAGAAATTGGTTACACCTTTAGTATCGGAACTTCCGGTTATGTTAGCAAAAACATGTGCTATGCATAATCCAATAGTATATGCATTTAGTCATCCAAAATTCAGAGAGGCATTGCGCAAGCGTGTACCGTATTTGAAGTTTTATTGTAAAGTCCCGCAAAAGCAAACGAAATCCACATCAGGATCAGATCAGAGGCGAAGAAAAGATACAGCAAAACGTCATGTAAGTAGAGTAACAAGTGCAGATACTAATGAACTTCCTGGTAGTTTGAGTGAGGCGTCAAGTTTTGTCAGCAATATAGATGATTCCATGTGCGCACACTTAGTTCACATGAATCGAACCGTTTCAGAAATGGTTCCGAAAGGCGATTACAATGACATTGTACGGGAACTTGTAAGTGCGTTAGTAGGTGTTGCAAGTCGCCAACAGTTTCTACAACCTATTTATAATCCAACTGAAGAAGCCGGAAGTTACAACCAAGTATTTAGCAGTTCCCATGGAGATATATCATCCTATTTATCTCATTTAGTTTCCGAAGATCGTAGAAATGCTAGTAGACGCGGTGGTGGTCAAAAGAAAGTTTCCGAAACACAGATGGAAGAAGCATATAACTTGCTAAAAGAAGACAGCAAAATAACTGTGGGCGATCCAAGTCCAACAGTGGCTCTAGCAACAGATGTATATAATGCTACCACCAGTATCTATGATACATACGATTACTTTATACATCCTCACTGGAAACAGTTTGGACTGGTTCCCACTTGCAAGTTTTATGGTTTCATCGGAGGTTTATTTGGGCTTATGTCAATAAACACTCTCACTGCCATCTCCTTTGACCGATACCTCAACATAGCAAATCCTCTGTTGGCTGCGAAAAATATGACTAGGAGGAAAGCCTTTAAGATGATAGTGGTTGTGTGGGCTTGGTCTCTACTTTGGTCTGTTCCGCCAATATTTGGATGGGGAGCTTATGTTCCAGAAGGATTCCAGACGTCGTGTACCTTCGACTACCTCAGTACCGAACATCACACGAGATCCTACATCTTTGGACTGTATATTGGAGGTTTCGTTGTACCTCTTGTAATCATTGTTGTTTGTTATGTCCTTATTGTTAAAGCTATCCGTAAACATGTAAAGGAAATGGACAAGGTCGTACATAGTCTGAACGTAGATCTGCAACATAAACAGGAAAAAGCCAGCACGGAAATCAAAGTAGCAAAGATTGCTATGAAGATTATCACTCTGTATATTCTATCATGGAGTCCTTATGCTACGGTTGCACTGATTGGTCAGTTTGGTCCAGCTGAATGGGTATCACCAGTCGTGTCTGAACTACCGGTTATGTTTGCCAAGGCATGTGCAATGCATAATCCTATTGTATATGCATTCAGTCATCCGAAGTTTCGAGAAGCACTTGCCATTCGTGTTCCATGGCTGTTGTGTTGCCGTGATGTCAAGCCAAAAACGATTCCATCAAAGATATCCTTAGATCCAAGTACATGTGGGAAACGCCCTCTTTTTCGTAACATAATCAGCAGCAGTAACGGGAGTGAGGCATCAAGCTGTGTAAGCAATTTAAGTGAAATAAGCTCTAAAAGGAATGGGTGGCAAATGTCTCGTTGCAATAGTTCTGATAGTGATATGAGATCGAACCAAGTTATAATTGAGCTTGCACGCGCCCTGACCACTGTTGCTAACCGAAATACTACTCAATCAACCAGCAAACAAGAGCATTCCCAAGATGGTTTGTTTATTGGAGATAGAAAACAGGAAGATCTTATTGCTTATCTTGTGTCATTCGTGAATTCTAAAGAGAATACACGGGAGACTTCTGATAAAACTAAAGGTGAACTCTAA

Transcript

Bpl_scaf_38266-1.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR027430	Binding_site	Visual pigments (opsins) retinal binding site	Interproscan
IPR050125	Family	G-protein coupled receptor opsins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24240	OPSIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007602	Biological Process	phototransduction	Interproscan
GO:0008020	Molecular Function	G protein-coupled photoreceptor activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0071482	Biological Process	cellular response to light stimulus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04253	RRH; visual pigment-like receptor peropsin	-	G protein-coupled receptors	ko04030	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_38266-1.1 global RNA-seq network