Gene detail

Detailed information of Bpl_scaf_38134-9.14 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_38134-9.14	MATRIX PROTEIN, PUTATIVE-RELATED	Bpl_scaf_38134	1047230	1059344	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_38134-9.14

ATGATAATAACTGAATTTTGCAGGTTTGAACTAAGCTGGTCTATTATTGAATTTGCTAAAAAGGAATTAGTAGTCTGTGAAGATGTAGGTACACTTAGTGTTACATTACAAAGGAAAGGTGCCCTGGAAAACATGGCCTTTGTTGGAATAACAATCCGTGAGGTGTCGGCGACAGAGGGAATTGATTTCGTTGCTAGCACAGCTCAACAGGTGCAATTCAATCCAGGTCAGGCACAAGCTGTTTGGGATGTAAGAATACCCGATGATGGGATTGACGAAATGAACGAAAAATTCAGAATAGTCCTCCGGGAACCAGTTAATGCTATTTTAGGAAAACATTACCGTGTCACTGTACGGATAATCAATGCCGAACGTGGCATATGTCCGCAATATCTGGGAATGATATCTAAAGATCAAACAGAGCTGATTGATATGGGTGGGATTTTCCAGCCATCCACTGGCAACACTGACACACTGATACCGAATCCTTCGAAGAAATTTAAACAGGGAAATCCCATTGATAATACATATAACACTGAACCAGGGAAGAAGTCTTCTGTTATCGTCAAGGTTCCGTCTGGTGATGATGCAAATATTACCAAACAAAAGGAAGACAAGGCAGCCAAAAGAAAAAGATCGAAGAAGAGAGGAAGAAAAAACAAAAAGAGGAGGAGGAATGGAAAGAAAAAGCGACGCAAAATGAGGGCTAACAAAAAGAAGAGAAAGAATGTGCCTTCTCCTGCTGTCAACATTAAGGCCCCGCAGAAGTGTACCTCTACTACAAAAGGACTTCTTCATTTCGATTTGTTCTCTCAACAAATGTACTTCTGTGATGGAGGACAGTGGAAGAAATGGTCTTCTGATGGTAAAGATGAACAATCTGATAGCAGATCTAATGATAAACAATGCACCAGTGGGCAATATTTTGACGGTAGATGTTACACATTTGTAAACGAGAGACTTAGCTGGAATGCTGCAGAGTATAAATGCGCTTCATTGTCTTCAATGAAATCCACCCTGACAACAGTCAGATCAAATGAACATTTCAATTTCCTTATTAAGTTGGCATCCAAAAAATCATTCTGGATTGGTTTGAACAATAAAATAAACCCTACAGAATGGAAATTTCTTAATAAGGAATCGTACCAGTTTGCCAACTGGGGAAGATTTCAGCCAAATACACGTGGACGAAATGTCAACAAACATTGTGTACAAGTTGGTAAAAATAAAACATGGCGGAACAAGCGCTGTGATACAACTACTAAAAGATTTATATGTGAAGGAATTCCAAATACTAGATCAGATCAGCCAAAGCGATCACGTTCACGGAGGAGACATAGATACAATAGATTCTTTTAAATATCTATGTTTCTGGATAAATTAGGCTGCGTTCGTTCTTCAGCAATATTATTATTGTATACCAATTTAAGGTTGTGACAACATGAAGATGCATGGCCATGTGCTGAAAATGTCTCTCAATTGTTAAATGACAAAATATTTAGTGCTGACTGAAATTTGACGAGAAATTTATATTTATATAAAGTTGTAACTTATTACAAGCATTTTTACAAACGCTATTAAATATTACAAAAATAGGATTTATTTATGTGTATGTTATTTGTACATTTTTTATTGGTCATTTGAATAGAGGAGATAATTTTCTGATTGGATAAAAGGGTAATTGTATATGTACATTTATTAACATGTGTAACTTAGCTTGTTAGTTATTGTGAATATCTTCCAATATAGGTATGATAGTTGTTGAAAATTATCAAAGTTATACATATAAGGGCATATGAATTGTGATATTTTTTTTCTTTTACTATTATATATTTATATAGACTGAATTAACCCAGCAGACGACACCTTTGAAATTAAATTGGCCTTGTAATTTTATTAAAATTAAGTGTATTTGAGATTACATGACAAAATGTACACTGGTGAACAGCTACCCCTAACATATGTGAGAGAAATATAGATATGTAAGTGTTGTGCGAAAACAAATATCAAACAGCAAAGGAGATTTTACATATGTCTAATCTACAGAAATCTGGTTCTGATTTATTGTCAAATAAAATAAAGTTAATTGTTTGGCAGTGAAAACCAAGTATGTTACAATTATTTGAAGATGATGTTGATGTAAAAAGCACTTGACATCAGAATTGCATTTGCAGGTTACTTTTTAAAAGTCATTCATTGTTCGAGATCTAACAAGCAATTCATTGAACTGGCTAGTAATATACTGAATACAACCATTAATATCCTATCATACATCATAAGTACATGAAAGTACATTTAATATTCATTATTCTTGTTCACACAAATACTCCAGTGTTTTGTAGAAACTGTACTGCAATAAGCAGTGCCGGATTTATACGGAGAGAAGCCTTATGTTTTTTCGCTAAGCCCCTCCCAATCCTTCACCATCAATACTAGAGGAGGATTGAAGAGTATTTTACAAATTTGAATAAAGGACAGGATGATGACAGGTGTTTAAAATTCTGCAATATTCTAAAATGGAGTGCAACTGTGCAAGGCAAATTACTGAAGGGTTGTTTAGAGAGTATGTAGTGTGTTATGACAGCATATGTATGAAAGTCCGATGACAGTGTCAAAAATAGTTTGCCCATTACTCGGAGACCCTCTAAATTTGCATACCCTTAGCTTCAGCCTGTCAAACCTATAAGTAAATCCGGCACTGGCAATAAGACAAACTACATGTACATATGAAATTATAAATAATAAGCAATAGCATTTAATATACTGGTGTTTATATTTTGGGACAATGCAGGCAATAATACTTCATGTACATCGAACAAATTATCACTGCCTTGTATATAATGATCTCTTCTATGTCACAAATTACAAGGAAAATGTATTCTTATTTTAGTTTTAGTTTTTTTTAAATGAAGATGAATGTACATGTACTTGTGTAGAATTATAATACATTTAATGTTATTTTCAAAATATATAGGTTGTTTCGTTTAGGACAGGCATATGGAAGAAATAAACGATTCCATGGCCAAAATGTCCAAGTTACAGATTAAATTGAATGAACATTATATAGTTAGTGCAGATGTTACAAGGGGGTCTGTTCTTTCTTTTGACCTCACACGTTTTGAATGGCAATAGTGAACAGTGACCTCACCAATTTTTTGTTTAAAGTGATATAAGATCCCAAACGATATTCTTTATGGAGCCAAACTTTCATATATTTTTCTCTATGTCTTGTGCTACACTTGAGGAACTGTCACACATGATTTTTAGGTTTATATCGTCTAAAATTCATATGATTATCATGTCAATATAAAGGCATGCAAAATTCATACGATTTTGTTATGCAAACCATATGATCGTCTTAGCATGAGAATGTGCATTTTTCAAACTGTATAACAGATTCATTTTAGCATGCGAATCATGTGAATTTGATTCATGTGATAATGAGATTTTTGTTCCAAAAAGATGTTTTAAATGTGCATAACAATCATGTGTGACACTGTTACCTGACTATAGTACTAGATATATTAACACCTGTATTACCTGTAATTATTTAATGCTGTTTATTGTGTATGAACATTGTACATACTGTCATTTTGTTGTTGTTGAGTTTGTAAGCAATAGTTAATATGACTCATGTTGCTTTATTCTTTTATAACATTAAAACAGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00059	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF03160	Calx-beta	Calx-beta domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR003644	Domain	Na-Ca exchanger/integrin-beta4	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018378	Conserved_site	C-type lectin, conserved site	Interproscan
IPR038081	Homologous_superfamily	CalX-like domain superfamily	Interproscan
IPR051561	Family	FRAS1-related extracellular matrix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45739	MATRIX PROTEIN, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007154	Biological Process	cell communication	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_38134-9.14 global RNA-seq network