Gene detail

Detailed information of Bpl_scaf_3805-4.19 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_3805-4.19	RAP GTPASE-ACTIVATING PROTEIN	Bpl_scaf_3805	492848	536340	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_3805-4.19

ATGTTGAAGAGGACAGCAGAATGGGATGAGAAAGTGATGGCACAATCTTCAGATTATTATAGATACAATAGTAATAGTAAATCTAATGGATATATCACCAACTCTCCTCCTCGTGACACTTTTGTGCGCGGGGGACAGAGAGCTACCATACATGGAACACAGGCAGCCAAATCATGGAGTAAAAATAAATCGAAAGGCAAAGAAAAAAAAGAAAGCAAGAAAACCACAATGCGTAGGAGCAATAGTAGTCTAGAAATGGATAGTATTGATTACATTGATGTTGATGAATTTCATACCGGAGTATACAGGGATTATGGTAGCACGTCATCATTAGATGTTCTCGGGAAAAGTAATGATAGTTTCTTCGATTTGATAAAAGTCCATAAGGATGTTACAAACTTAGATCAAAGAAGTCCTGCACCAGCGAAGTTACAGGAATTATTGAGGGGTAAAAATGAAGGTGTGCGATTTCATGTTTCTAATGGAAGTGCTGTGAAATCCTCAGAGGATGTGACTGATAGTCCAAAAAATAAATCTAAATTTAAGCATAAAGATCGAAAAAGTCGGAGCAAGTCAATAACAACTGAAACACGTCCAGGAATTTTCACAAAATTACGTGGTAAAACGGACACAGAAGTTAACCCGAAAACACCTGAAAATATTGATGTAGACGTTCGTGCTGAAGAACGATTAAGAAGTAAAGCATTTTTGCATTATGATTGCCAGAGTATTTCATTTGATGTGGAGGAAACAATTAGAAACATTAGTAATCCGTTCTGTAATAAAAACAAGACTACAGGTGCATCTGCTGCGTCACAGAAAGATGGCAGCCAGTCAGATGATAATGGTGATGATAAATGTAATGACTTGGTGCTTAAATGTCCCTTCTTCAGAAATGAAATAGGGGGCGAAGAAGAACGCATTGTTAGTTTAGGTAGAATGTTGAACAAATCAAAGAATACTCAAAATAGTGCAATATTGACTAGATCTCCAGCTTGTTGTGGATTATCTATCTTAGATTCTTCCCCGACCCCCACAGGATTGATCCTCCCCCATATTGTTTTACACCGTAATCATGTGATGGAGTATGTAGATCATGGGGCCAGCTATTATAGACATTTCTTTTATGGATATGATCATCAGAATTATTTTGGTATTGATGAAAATTTTGGACCAGTTGCTATCAGTATTCGTAGGGAAAAGCTTGAAGATAGAGAGAACGGATTAGGGAAAGCAGAATATGGTCAATATCAACACAGAATGATATTTAGAACCAGTGAGCTTACAACATTACGAGGGTCTATACTAGAAGAAGCTATACCTTCATCTAGTGGAAGACTGAGTAGTTCTCGGACTGGCCAAGTCAAGGACATACTTGAATTCCTGATACCACAGTTACAGATACCTTGCCTAAAACTTGGAACCTCTACACCTAAAACATTGGAACAATTGTTAAAACTTGATGAACAAGGGTTGTACAGTACATATAAAGTTGGTGTTTTATTATGCCGTTCAGGTCAATCATCAGAAGAGGATATGTACAATAATGAAAATTCTAGTCCAACCTTTGAAGAGTTTTTAAAATGTATTGGACACAAAGTGAGATTGAAAGGATTTGAAAAATATAGAGCACAGTTAGATAATAAAAGTGATTCAACAGGGACATATTCTTACTACACAACATTTAACAACAGTGAAATCATGTTCCATGTGTCAACCCTCCTACCTTATACTTCCAACAATAAACAACAGTTACTACGCAAACGTCACATAGGAAATGATATAGTTACTATAGTCTTCCAGGAGCCTGGAGCTCTCCCCTTTAGTCCAAAGACTGTCAGATCACAGTTTCAACATGTGTTTATTATTGTCAGAACACATAATCCATGTTCAGATAAAACACATTACAGCATTAGAATATATTTTAACCAAGGGGAATCTATTCTTATAAAACCCACCAGTGGAGAAATGGAGGAAACTCAAGAAGTTTGTGATCGATTAATAGGTGTCACTACAGGATGTGAGACACAAGATATGACATTGAAAAGAAATGGTTTAGGGCAGCTTGGATTTCATGTCCAGAATGACGGGATAGTTACAGATGTAGAAACGACTGGATTTGCTTATGACGCAGGCCTGAGGAAAGGGAGCCGATTAGTAGAAGTGTGTAAGATAGCAGTAGCTACCTTGACACATGATGAGTTGGTAGAACTATTGAGAACATCTGTCACTGTTAAAGTTACGGTCATACATCCGTTTGATGATGGCACACCGAGGGGTGTGGCTATGCTACACACTAATTGTCAGTCATCTTCACAGAAGACATTAAAAGCTGCTTTACAAGCCACAGAATACATCCAACAATGGCAGAAAGGTGTTGGAGATTATAAGAGAGATGATCTTTTTCACTCTCGGGATCTCTCCAGTAGTTCTAGTGAAACTTCCTATCACTTAAGGGAGATTCCTCTGATTACAAAGATACAAGAAAGTGAGGAAGGTGGAGATAATTTCAGAGGATCTATGACACTTCCACTACAGAAGAAACCATTAACACCGACTAGAACTGATGTAAAGAATTCTCCACTAAGTTCTGTGACACCTCAGTACCGATTCGGAACCTCTAGTCTTCATAGAAACACGTCCTTGCATCATGCTTATACTGAACCAATCATAGACAAGAACCACTGTAATAGTAATGAAGATATCAAGCATGGCCGTAGTAGTTCTAGGGACAGTGCAGACTATGCCTATCTCGTCACTCCTACCCCTATCAACAGACAAAAAGGGTACCAGCCAACAAAATATCAGGGAGGACCAATGTTGATAGATAGTTCTGGTGACCAGTCTGATCATTCATCCAGTGTGACATCATTATATAGTGCTACTGGTTACCGTAAACCTTCTTATCCTGCAGACTCTGTACAGCATGGAAATATTTCCTTAGAACTGTTAAAACAGTCACAAAACACAAAGTTTTTACTCAACAGGGGACCAGAACCACCCAAACCAAATCTTAGTGATACTTCATTTTCTAGTGGATCATCATCAGGGCAACGTAATCAAACAGAAAACAAGGATGATGTAAACCGTTATATTCAGAAACCCGCCTCTAAGATTATTAGGAAAGCAGACTCACCTGTTAGTAGTGCCAACAGTAGTCCAAAAACAAACCACAGAAACCTGTATGGGACCTCATCTGAAGAATCTCTCAACACAAGATTACGACCAGGTGTGATGGGGATGACTAAATCATCAAAATCAGACAATAATTTTGAAGCTGAGTTAAAACGTTTAATAGATCCAGAAAAAGCTGACAAAGATCTAAAAGGTTATCTTGCCAAGAAATCAGACGGACGTTTTTCGTCAAGGATTAAGAGAACAATGTCAGATGAAAGTTTACATAATCAGAAATTTAGTTCTGCACCACTACTAGAAACACATCTGACTGATGTTATATTTACAACAGCTTCTTCATCACAACAACAAAACAAAGATCAAAGACAAACACCAAGAGTGACAACAGCAGACGACAATCATGGAGCAGTATCCAACAATGTACCATTACCTGAATCTACTTCAGGGTTAGAATGGTCTAGTCTAGTCAGTGTAGCTACTAAAGCAATAGAAGCACTCGATGAGGAAGTACAAGAATTACGAGCTGAGAATGTCCGATTACAAGAAGAGTCACAACAAGCAGCCGCACAGCTTAGAAAATTTACTGAATGGTTCTTCAAAACGATCGACAGAAATTAG

Transcript

Bpl_scaf_3805-4.19

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF02145	Rap_GAP	Rap/ran-GAP	Family	Interproscan
PF21022	Rap-GAP_dimer	Rap/Ran-GAP protein dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000331	Domain	Rap/Ran-GAP domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR035974	Homologous_superfamily	Rap/Ran-GAP superfamily	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR050989	Family	Rap1/Ran GTPase-activating	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15711	RAP GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0051056	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17701	SIPA1L1, E6TP1; signal-induced proliferation-associated 1 like protein 1	-	Rap1 signaling pathway	ko04015	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_3805-4.19 global RNA-seq network