Gene detail

Detailed information of Bpl_scaf_36987-0.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_36987-0.3	ELONGATION FACTOR G, MITOCHONDRIAL	Bpl_scaf_36987	5752	28806	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_36987-0.3

ATGACAATTATTCGCTTTACCGCGAGTGTCATCAGACAACAACATCATAGATCTTTATTGTTTAATCAGTTAAAACCAGTTTGTTGTGCATGTTACTCTGGTGGAAGAAAATTTGGTGAAGTTGAAGCTGATGTCAATAAAATCAGGAACATTGGAATTTCAGCTCATATTGATTCTGGTAAAACTACGTTGACAGAACGATTATTATTCTATTCAGGGAAATTAGCTGAAATGCATGAGGTCCGAGGAAAAGATAATGTTGGTGCTAAAATGGACTTCATGGAATTAGAAAGACAACGAGGAATCACAATTCAGTCGGCAGCAACATATGTTAATTGGAAAGGAACGACAGTCAATATAATTGATACACCTGGACATGTAGATTTTACTGTTGAAGTAGAAAGAGCTTTACATGTGTTGGACGGTGCCGTATTAGTTTTATGTGCTGTGGGGGGTGTTCAGACACAGACAATGACAGTGAACCGACAAATGAAAAGATATAGCGTTCCATGTGTTGCATTCATTAATAAACTAGACAGACTAGGATCTAATCCGTTTAGAGTATTATCACAATTAAGATCAAAGTTGAACCACAATGCAGCATTATTACAATTACCAATAGGATTAGAATCTGACTGTGAAGGAATTATTGATCTCATTCGTAGAAAAGCTGTGTATTTTGATGAACCGATGGGGTTGATGGTACGTGAGGATGAAATCCCTTCTCATCTGAGAACAGAGAGTGAACATAAAAGACAAGAACTCATTGAACATGTAGTGAATGTTGATGATCATTTAGCAGAAATATTTCTAGAAGAGCGACAGCCAACCGAAGAAGAAGTACATGCAGCAATAAGAAGGACTTGTATAAAGAGAACATTTACCCCAGTACTGGTAGGAACAGCTCTTAAAAATAAAGGAATACAGCCAGTGTTAGATGCCATTGTTGATTATCTACCTAACCCCACAGAAGTGCCTAACTACTGCTTAGATAACACTAATAGCATTGACAATCCAGAGAAAGTCATCATGGATCCTGTTAGAAGTTTTGATAATACATTTATTGGTTTAGCATTTAAGCTTGAGGCTGGAAGATTTGGACAGTTAACATATGTTAGATGTTATCAGGGTGGGATGAAGAAAAGTGACACCATATACAATACACGAACAAATAAAAAAATGAAGGTAGCACGTATAGTGAGAATGAATGCTGATGAAATGGAGGATATTAACGAGGCCTTTGCGGGTGATATAGTTGCTTTGTTTGGAGTGGATTGTGCTGGTGGTGATACATTTGTATCTAAAGGAGGAATTAATTTCTCTCTAGAATCAATGTTTATACCAGAGCCTGTGATATCAATGTCAATAAAACCAGTCAACAGTAAAGATGTAGATAACTTCTCTAAAGGTTTGAGTCGCTTCACCAGAGAAGATCCTACCTACCACATTAAATATGATACTGAAGGTAAAGAAACCATCTGTTCAGGAATGGGAGAACTTCATCTAGATATTTACGCACAGAGATTGGAAAGAGAATATAATACTAAATGTATACTAGGAAAACCCAAGGTAGCATTCAGAGAGTCTTTATTAGAACCTGTAAAATTTGATTATCAACACAAGAGACAATCAGGAGGAAGAGGAGAATATGGTAAAGTTATAGGATATATGGAGGCATTGCCACCAGACATGAACACCAAATTAGAATTTGTAGATAAAACTGTCGGAACGAATGTACCAAAAAATTTTATCCCAGCAATTAAAAAAGGATTTCTAAAAGCTTGTGAGAAGGGCATATTATCAGGAAACAGAGTAGCAGGTGTAAGATTTGTACTGACAGATGGTGCTCATCATATGGTAGATTCCAATGACTGGTCATTTGAACAGGCAGCAGATATGGCTGTCAAGGAATGTTTTGATTATGGGATGTGGCATATATTAGAACCTGTAATGTTAGTTGAAATCAATGCACCGGGTGAATTCCAAGGATCAGTTATGGCTGGAATGACAAAAAGAAATGCTGTTATACTGGGAACCGATGCTAATGAGGGATACTTTACATTATACTGTGAAGTACCATTAAATGAAATGTTTAATTATTCAACCGAAATTCGATCAATGACACAAGGAAAGGGAGAGTACTCTATGGAATTTAGTAAATATTGTCCTGCCACTCCAAGAACTCAAGAAGACCTTATTTCACAATACCAAGAAAGTTTAGGAATAGCACAATCTAAACGGAAGAAAAATTAA

Transcript

Bpl_scaf_36987-0.3

CATGGATGGACTGTGACATTGAACAGTGAATTAATTTTGTTACATGTAAACAAATAAGATGACAATTATTCGCTTTACCGCGAGTGTCATCAGACAACAACATCATAGATCTTTATTGTTTAATCAGTTAAAACCAGTTTGTTGTGCATGTTACTCTGGTGGAAGAAAATTTGGTGAAGTTGAAGCTGATGTCAATAAAATCAGGAACATTGGAATTTCAGCTCATATTGATTCTGGTAAAACTACGTTGACAGAACGATTATTATTCTATTCAGGGAAATTAGCTGAAATGCATGAGGTCCGAGGAAAAGATAATGTTGGTGCTAAAATGGACTTCATGGAATTAGAAAGACAACGAGGAATCACAATTCAGTCGGCAGCAACATATGTTAATTGGAAAGGAACGACAGTCAATATAATTGATACACCTGGACATGTAGATTTTACTGTTGAAGTAGAAAGAGCTTTACATGTGTTGGACGGTGCCGTATTAGTTTTATGTGCTGTGGGGGGTGTTCAGACACAGACAATGACAGTGAACCGACAAATGAAAAGATATAGCGTTCCATGTGTTGCATTCATTAATAAACTAGACAGACTAGGATCTAATCCGTTTAGAGTATTATCACAATTAAGATCAAAGTTGAACCACAATGCAGCATTATTACAATTACCAATAGGATTAGAATCTGACTGTGAAGGAATTATTGATCTCATTCGTAGAAAAGCTGTGTATTTTGATGAACCGATGGGGTTGATGGTACGTGAGGATGAAATCCCTTCTCATCTGAGAACAGAGAGTGAACATAAAAGACAAGAACTCATTGAACATGTAGTGAATGTTGATGATCATTTAGCAGAAATATTTCTAGAAGAGCGACAGCCAACCGAAGAAGAAGTACATGCAGCAATAAGAAGGACTTGTATAAAGAGAACATTTACCCCAGTACTGGTAGGAACAGCTCTTAAAAATAAAGGAATACAGCCAGTGTTAGATGCCATTGTTGATTATCTACCTAACCCCACAGAAGTGCCTAACTACTGCTTAGATAACACTAATAGCATTGACAATCCAGAGAAAGTCATCATGGATCCTGTTAGAAGTTTTGATAATACATTTATTGGTTTAGCATTTAAGCTTGAGGCTGGAAGATTTGGACAGTTAACATATGTTAGATGTTATCAGGGTGGGATGAAGAAAAGTGACACCATATACAATACACGAACAAATAAAAAAATGAAGGTAGCACGTATAGTGAGAATGAATGCTGATGAAATGGAGGATATTAACGAGGCCTTTGCGGGTGATATAGTTGCTTTGTTTGGAGTGGATTGTGCTGGTGGTGATACATTTGTATCTAAAGGAGGAATTAATTTCTCTCTAGAATCAATGTTTATACCAGAGCCTGTGATATCAATGTCAATAAAACCAGTCAACAGTAAAGATGTAGATAACTTCTCTAAAGGTTTGAGTCGCTTCACCAGAGAAGATCCTACCTACCACATTAAATATGATACTGAAGGTAAAGAAACCATCTGTTCAGGAATGGGAGAACTTCATCTAGATATTTACGCACAGAGATTGGAAAGAGAATATAATACTAAATGTATACTAGGAAAACCCAAGGTAGCATTCAGAGAGTCTTTATTAGAACCTGTAAAATTTGATTATCAACACAAGAGACAATCAGGAGGAAGAGGAGAATATGGTAAAGTTATAGGATATATGGAGGCATTGCCACCAGACATGAACACCAAATTAGAATTTGTAGATAAAACTGTCGGAACGAATGTACCAAAAAATTTTATCCCAGCAATTAAAAAAGGATTTCTAAAAGCTTGTGAGAAGGGCATATTATCAGGAAACAGAGTAGCAGGTGTAAGATTTGTACTGACAGATGGTGCTCATCATATGGTAGATTCCAATGACTGGTCATTTGAACAGGCAGCAGATATGGCTGTCAAGGAATGTTTTGATTATGGGATGTGGCATATATTAGAACCTGTAATGTTAGTTGAAATCAATGCACCGGGTGAATTCCAAGGATCAGTTATGGCTGGAATGACAAAAAGAAATGCTGTTATACTGGGAACCGATGCTAATGAGGGATACTTTACATTATACTGTGAAGTACCATTAAATGAAATGTTTAATTATTCAACCGAAATTCGATCAATGACACAAGGAAAGGGAGAGTACTCTATGGAATTTAGTAAATATTGTCCTGCCACTCCAAGAACTCAAGAAGACCTTATTTCACAATACCAAGAAAGTTTAGGAATAGCACAATCTAAACGGAAGAAAAATTAATATTTTCATTAATTAGGATTTGATCAATTTTTTAATTATATAATATAATTAACACATAAATATCACTTTGTCTGGTGTTATTCATCAAAGCGTCAGCATCTTGTTTTACTAATAAACAGTGGGAAAGAGTGAAACAAAATAAATATAACAATCTTCAGTTTATTCCTATCATATTGTGTGTTTGTTGAGGACAGGCCATACATTGTCTGCAAGTCTTCAGTTTATTCCTGTCATATTGTGTGTTTGTTGAGGACAGGCCATACATTGTCTGCAAGTCTTCAATAAGTTTTATCTTTTTATCTATTGTTAAGTGCTGTCATTGTTGTATCTAATATATTGTATATATTGAATTATTTATTATATTAAAATGACTGTTTTTATAAACCGCCACAATATAGCTGAAATATTGTTGAAAGTTACGTTAAACACCATAGTCCTAAACCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00679	EFG_C	Elongation factor G C-terminus	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF03764	EFG_IV	Elongation factor G, domain IV	Domain	Interproscan
PF14492	EFG_III	Elongation Factor G, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000640	Domain	Elongation factor EFG, domain V-like	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR004540	Family	Translation elongation factor EFG/EF2	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR005517	Domain	Translation elongation factor EFG/EF2, domain IV	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR009022	Domain	Elongation factor G, domain III	Interproscan
IPR014721	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR020568	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031157	Conserved_site	Tr-type G domain, conserved site	Interproscan
IPR035647	Homologous_superfamily	EF-G domain III/V-like	Interproscan
IPR041095	Domain	Elongation Factor G, domain II	Interproscan
IPR047872	Domain	Elongation factor G, domain IV	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43636	ELONGATION FACTOR G, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0070125	Biological Process	mitochondrial translational elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02355	fusA, GFM, EFG; elongation factor G	-	Translation factors	ko03012	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_36987-0.3 global RNA-seq network