Gene detail

Detailed information of Bpl_scaf_3680-2.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_3680-2.4	MTG8 ETO EIGHT TWENTY ONE PROTEIN	Bpl_scaf_3680	242405	268463	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_3680-2.4

TAGAGAGTAGCAATACACACACATGGATCGTACAAACATTACAGTGATTGCCAAATTTATTCTCTTAGCTTTGATGGATGTAATCTGAATTGTGCATTACAATATTATAATATCTTCAGTGTTGAGATTTTATGTTTTATAACCTTTCATTTGTTGATTAATAAGAACATATTTGAGTAAAAGAAGTTATCTTATATCTCGGAGGTTCTCAAACATGATGTTGAAAATCTAATGACAAATTATTATCGTGAGAGCATAATGCCAGAGTCACCTGATATTAAGGCCCCACAACATTCACCACTTAATATGACAGGAGGTATGGGTAGTACTGTGAGGGACGTACCTCGCCCACAGTCTGGAGGAACAGCTTTGCCAGCATCTGGAAATCATTCGCCCATTGGAAGTATCAATGGTGGTACAATGTCACCATCAAATATACTCATGAACTCTTCTGTTAGTCAGCAGCTTCCTCCTGCCTGTGGAGCACGTCAGCTTAGCAAACTCAAAAGGTTCCTTACCACATTACAACAATTTGGATCAGATATTTCTCCAGAGATTGGAGAGAGAGTTCGGACATTAGTCTTGGGACTTGTTAATTCACATTTATCCATAGAAGAGTTTCACGCTAAGCTACAGGAAGCAACAAATTTCCCATTAAGACCCTTTGTCATTCCATTTTTAAAGGCAAATTTACCATTACTTCAGAGAGAATTATTACATTGTGCAAGAATGGCAAAACAGACACCTCAGCAGTACTTATCACAACACGAACAGATATTGTTTGATCAGTCCTCGCCCACTACTGAACCCCAGGACTATTCCAATGAAGTAAATGAAAATGGCAAAAGAAGATCTCCTGACAGACCTAAAGAAAATGGCATTGATCCACATACAGATCACCCTGTGAAGAGATTGCACAGTTCTCGTGTCAGTCCAAATGGTATAATCAACCTAAATGTTGGACCAATGAGATTAGAGGATGTCAATTTGTCAAGAGAGTTACGAGAACATGAGCGTTTTGAAAGAGCAAGATTAGAACGTGATTCCATTGATCGTAAACATGACGGTGAACAGCATTATCCTTCATATAATAATTACACCACAAGATCTGATACGTTTGATCCATTAGACAGATTGGATGATGATTGGAGACATGTAGAAACAATGTTGAATTGTATTATTGGTATGGTTGACAAAACAAAGCGAGCTCTGGCAGTATTACAGGAGAGGAGTTTGCGGGACCGTGAAGAGTTGTCACTTTGGATGAGGAGACAAGCAGAAGGTTTGGACCATGACATTAAGAAGCGATCATCAGACATGATGTCACACACTCTGAGACAAACAGAAGATAGGGTTGCTGATGTCAGGAGAAGAGCAGAAGAAGCAGTAAATGAAGTGAAGAGACAAGCCATGTTAGAATTACAAAAAGCTGTGAAAACTGCCGAGATGAAAGCTAACGAACTTGTTACGACAGAAAGAATTAAGATGGAAAGGGCAGTAACTGATGCTAGAAAACAAGCACGCGATGAAGTCATAACTAAAATTAATCACCAAGAAGAATCTAGTGAGAGTTGTTGGAACTGTGGAAGGAAGGCTAGTGAGACTTGTAGTGGGTGTAACATAGCTAGATATTGTGGCTCATTCTGTCAGCACAAGGACTGGGAAAATCACCATCTTGTTTGCGGTAAATCACGCTCATCAGCATCAACAGGTCCAGAGCTTAGACCAGACTCCCAAAAATCTGCCTTAAAGAGTCCTCAGGAAATGTCAGTAGTAATTGAACAACCGGACACTGCTTGTCCGGTCAGCTCAGTTGAACAATTATCTGTGTCACCGAGGTCAAATACAGGGTCACCCATAGAAACAAAAGTAGCCGATGTGTCACGATGAAACATGATGTGTCACGATGAAACATGGTTTAATGATTCTTATTTGTTTCAATTGTTGAAATCTTTATTCATTTGTTTTTGACTATTTTCATCTTACTGATGAATGTAATGGAAGAGAACAGACATGTAAGACTGAGATATTCATGATGGCTAGTGATTTCTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753	zf-MYND	MYND finger	Domain	Interproscan
PF07531	TAFH	NHR1 homology to TAF	Family	Interproscan
PF08788	NHR2	NHR2 domain like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR003894	Domain	TAFH/NHR1	Interproscan
IPR013289	Family	CBFA2T family	Interproscan
IPR014896	Domain	NHR2-like	Interproscan
IPR037249	Homologous_superfamily	TAFH/NHR1 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10379	MTG8 ETO EIGHT TWENTY ONE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006351	Biological Process	DNA-templated transcription	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10053	RUNX1T1, CBFA2T1; runt-related transcription factor 1; translocated to, 1	-	Pathways in cancer	ko05200	PMID: 28812709
			Transcriptional misregulation in cancers	ko05202	PMID: 28812709
			Acute myeloid leukemia	ko05221	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_3680-2.4 global RNA-seq network