Gene detail

Detailed information of Bpl_scaf_36689-4.10 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_36689-4.10	RNA METHYLTRANSFERASE	Bpl_scaf_36689	435125	477256	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_36689-4.10

ATGGAAAATAACAGAATACTTGGACAGCTCCAAGAGTTAGATTTGTTGGATTTAGATAAAGCAGTCTTACTTCACAGTCAACATATAAGAGATCATATTGTACTTGACAAGACATCTGAAAATAACTGTACATTACAACAGCATCTGACAACACTCAACTGTTTGATGAATGCACCCAAGATTGCACTGTCAGAAAATACATGCATCATAATTTTGCATCAGATTTGCATTCCTGTCCTAAAGAGCATCCATTTATCATTTGACGGTAGAAGGGAAAATATTTCTCTCTTAGGTCTAATTAACAAAATTATTACAGGATGTCTTAAAACTGAAAATGAGGCTTCTTTTCAGCCTCTTTTTGAATTATGTGTTAAATCCTTGAAAACTCATATAGAAATTAAATCATGTTCAATGGATAGCCAATCACAAGAAGGTGTGTTAGACTTGCAAGTATGTCTGGATTTGATACTTACTCTCACACAGAAAAAAGAAAATTTTGAAATGACAAGTTATTTGAAGTTGAATGACAACATTTTTAACAGTCTGTTATGTATATTGAGGCATTTTCAAAATCAAACAATTAATACTATAGCATTAAGATGTATTTTAAACATACTGAAAAATGTAAAACAACAGGTGTATTTGAATAGTTGTTGGGAACTGATAGAAAAAATGTGGGGAGAAAATGAAGAAGCTGAAAGTCTTAACATATATTTATGTGGTTTTTCAAACTATTTCTTTCCTATTGATGGTATATGTAGTATCAGTGTAAGAATTAAAAACACATTTTGGGAAATTATTCAAAAAGGATTAAATGCTAAGAACCCATTGACTAGAAAACAGTCATTGTATCTTATCAAGAGGAATGTTGATTTATGTGAGAAATTTAGTGACAATGTCAATTCAAATTTGAGTGACAGAGACGTTCCATTATTCTGGTGGTCGAAGGAACGACAGAGGAACCATGTTAAAGTTTGGGAGGATCTAGTCATGTTATTTGAAACATTTGAAGAAAAACAGATCCATGTAATAAAGCCACTATTACCAAGGTTACAAACACTACTCAAGGCAGCATCAAAGGAAGATTCTGTTCAACCATTATTACACACGTCTTGGTTATCAGTAGTATTCAGACGTGGTATTTCACATGAGAGTATAACTTTAGTCAAGTGGATGACGGAACAAGTTCTATATTTAGATTTTGAAGCTTGTCCAATGATACAGCAAGGCCAGGATAAATATTTGACCAATGATTTTTTACATTCTATTCAAGACCCAAGATTGTTTGCCAGACCACCAAAAGCTGTGAGGGGTACAATTCCTACATGTGTAGAAGGATTAATACATCTGTTTCAGAGCTGCTGGAAAGCATTGAAAACAGATGAAAAGAGAAGTCAGTTCTTCGCTAGTATTTTGGAAACATTAAGTACCAGTAACTGGGGACCAGTACCTTTAATGTTTATTTGTCAGGCTTTGTCGTGTGTACCAAACTCAAAGATACTAGACAAGCAAGCGTTGTTTTGTTTAAGGAAGATAATAACTACTGTTGGAGCAACTAGTGGAGTATTTATGAGGGGAGCAACAGAAAGCTTCTGTGCCAGAATCCTGATTTCTCTAACAAATACAGGAAATGTAACTCCAAAAGAATTTGCAATGATATTCTCAGTTTTCCACACAGAAGATGGACTAGCAAGGGGAACAACTCTTTGGACAGATTGTGTTGGTTGGCTTCAAGACTTGTGTAAAGAAGACAGCTCTGATGAGTGGTTTCCAAAATCATTGAATGAATTCCTTATGACATCAGTAAATTCATTATTGCAGATCAACCAAGAAGACAGTTTTAATTGCAATGAAACTGATGTTTTACAAGTGACACGGCTAATGCTACTGGCAGTAGACAGTGGTATACTCCCACTCAAAGTAGAACCAGAGATCATTGAACCCTGTATGACAGAGATAGTGTTGACCTTGACCAATATTATTGTCTCCATACCAAATCATCCTTATATGTCTTATCACAAGGCAGAGAGAGCTGTAGAAATTCTAATTTCTTTACTGAGAGAGGCCGGGAGTTTGGAAGATGATAATTTTTCGGTACTGATAAAGAAAAGCATACAAGATTGTCTCAGCAGTATGTTATTGTTTACAACACAGATGTTAATTGAAAATTGGAAACAGATATCATGTGTACAGTCTATAGAGCTTTTGGTTGATGGATTGGTTCATTTTCTACAGTGTCAACATAGAGAACAAATTAATCAACAACTACTGAAACTAACCAATACCTGCATACAGATTATCAGAGAATCAAACAAGAAAGAGAAGATTGAAATGGAAACACAGATTAAAAAACTAGCATCTATGGGCATACTAAGTTCTATATCATCAGTTATACAGGATGAACAGAGATCAGTTAAAGACAGAATTCTATCATTTACAGCTGAATACAACTGTACAACTTCATTTCACAAGCCTTTGTCAGATATAAGTCATAAAGAATGGGGAAAGATTGCATCTCTGTTTATATCATACCAATGGATAGTCATGGAATATTACCTAAGTCATGTAGATGTAGTAGATAAACCAATTGTTCCTATATTGAAAGTGTGTCAGGACTCACTGTCTGTGTGTGGAGGACAAAATACAATACCTGTGTATAGGTGTATTAGATACTTGTTAAGTAAGTGTAAAGTACCAAATGAATCAAGCAGTATTATAGAGGCCTTATCTGTTAGCTGGAGTCATGTTCAAGGGGAAAATAAAAGCACCTGTTTCTGGGAGGCATTAGAAGAATTTATATATTTAACCTTCCAGCCAGCTTTATTCCAACGGCCACAAGATTCATCTTTGACTGAAGTTCTTATAAAGTATGCAAATGAGTTGATGGAGCTTGGAAGAGAAAAGACAGGTGTTGGTAATATATTGATGAGGAGGCTTTGTACAATATGGAAGAACTCTCTGAGTACTGTGGAGGGCTTCTACTCTATCATAGGACAGGCTTCAATGTATGGCAATATATTCAGAAAACAAGACAGACAATTATTTGATGTGTTTGCATACATAGAATCTTTGGGTAAACATTGTTCTGTCAATGAACTGAAACCACATACAACAAAAGATATCATGGTTCGAGCAGAAGTGGCATCATTGATTTGTAGTCTAAGTCCTAAAAACACAGAACACCAGGAGTTTGCTGTAAATTTACTCAGGGAGTTGAGTCAGCAGTATAAAATGGTCCAGGAAGAGTCGTTCACTCCTGGAACTATAACAAACTCTTTTATGCACAGAAAGAAACACAGACTGCTTCAGATTGTGCTGTTATTAGAACCATTTATAGATGAGAAGAATTTTGATGTTATGTGGACCTTTGTATGGGACTTACTTATGTTTGAGTGTCAACCATCTATTCGTCACACTTGTGAATGGATTATAATGAGAATGGTTCTAAAGAAAACAGATGTTCTAGATGAGTTATGGAGTATCTTTGACCAGTTGACGGAGAAGAAGAGTACAGTATTATGCTCGATCATGTGTATTATGTCACACATCGGTATGCATTTACCACCAGATAAACAGGAATTGTTTTACTGCACATGCTTTCAAAAGTTATTGCCATGGTGTATGGCTAATCATTTCAACACTAGAGTCCATGCTGCAGCAGCTCTTCTGAAGCAGTGGGACCAGTGCAAGATGTTAGGACTGACCAAGGTCATGACCTCAAATTCTACAGCTTATTCCTGTCTTACATTTCATCAAGAATCAAACAATTATACGAAAAACATCCAGAGATTGTTGGAGAATTTTTTCTTTCAATCATTTGACTTCTTTCAAGATTTTAGCTTGGAGACAATATTCCAAACGTTACCATGGTTATTCCTGATACCAGATGATGAATGGATTTCTCCTCAGCAGTTTGAATCTATTGTTTCCTCCATCAGCATGTATATGCCAGTGTACAATTCTAATGATAAACTTAAGACTGAGACCCCAGGAAGCTGGAGATTTAAAAATCCAGGTGGTGCTTTAGAGGATAGTGATACAGAGGATAATACTGACAGGGATGTCCAGAAAAAAATAATGCCATGGAAACTGATGATACCAGACGAGGAAGTACAAGATGAACTTGAGTATAGTAACAGGAAGAAAGATGACGAAGGTCTCATTGTGGTTACTTCTCTAATTGATAAAATACCAAACTTAGGAGGTCTCTGTAGAAGCAGTGAAATATTTGGTGTATCTCAGTATGTAATTGGGAAGATGAAATATTTAGATGACAAAATGTTCAGAGACCTGAGTGTGACAGCTCATAAATGGTTACCCATTACAGAGGTATGGCACGAACTTCTACCTCAGTACTTAACAGAGAAAAGACAAGAAGGATGTACATTAATAGGCGTTGAGCAGACGGCAAACAGCGTTTCCCTCACTGATTTCACATTCCCAAAGAAATCTTTACTTTTATTAGGAAATGAAAAAGAAGGAATACCAGTGGAACTGATCAATCAGTTAGATGTATGTGTAGAAATACCACAACAGGGGATAATCAGATCTTTAAATGTACATGTCAGTGGTGCTTTACTTATCTGGGAGTACAGACGACAACAACTTGTTAATAGAGAGTCTACGAATTGA

Transcript

Bpl_scaf_36689-4.10

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00588	SpoU_methylase	SpoU rRNA Methylase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001537	Domain	tRNA/rRNA methyltransferase, SpoU type	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR029026	Homologous_superfamily	tRNA (guanine-N1-)-methyltransferase, N-terminal	Interproscan
IPR029028	Homologous_superfamily	Alpha/beta knot methyltransferases	Interproscan
IPR044748	Domain	Trm3/ TARBP1, C-terminal	Interproscan
IPR045330	Family	Probable methyltransferase Trm3/TARBP1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12029	RNA METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0016423	Molecular Function	tRNA (guanine) methyltransferase activity	Interproscan
GO:0030488	Biological Process	tRNA methylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_36689-4.10 global RNA-seq network