| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_36585-2.3 | RING BOX | Bpl_scaf_36585 | 221933 | 235476 | + |
| CDS | |||||
| Bpl_scaf_36585-2.3 | |||||
| Transcript |
| Bpl_scaf_36585-2.3 |
| Protein |
| Bpl_scaf_36585-2.3 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | E3|E3 activity RING|RING |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF12678 | zf-rbx1 | RING-H2 zinc finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR024766 | Domain | Zinc finger, RING-H2-type | Interproscan |
| IPR051031 | Family | RING-box E3 Ubiquitin Ligase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11210 | RING BOX | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0016567 | Biological Process | protein ubiquitination | Interproscan |
| GO:0031461 | Cellular Component | cullin-RING ubiquitin ligase complex | Interproscan |
| GO:0061630 | Molecular Function | ubiquitin protein ligase activity | Interproscan |
| GO:0097602 | Molecular Function | cullin family protein binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K03868 | RBX1, ROC1; RING-box protein 1 | - | Protein processing in endoplasmic reticulum | ko04141 | PMID: 28812709 |
| Ubiquitin mediated proteolysis | ko04120 | PMID: 28812709 | |||
| Nucleotide excision repair | ko03420 | PMID: 28812709 | |||
| Wnt signaling pathway | ko04310 | PMID: 28812709 | |||
| Hedgehog signaling pathway - fly | ko04341 | PMID: 28812709 | |||
| TGF-beta signaling pathway | ko04350 | PMID: 28812709 | |||
| HIF-1 signaling pathway | ko04066 | PMID: 28812709 | |||
| Cell cycle | ko04110 | PMID: 28812709 | |||
| Cell cycle - yeast | ko04111 | PMID: 28812709 | |||
| Oocyte meiosis | ko04114 | PMID: 28812709 | |||
| Circadian rhythm | ko04710 | PMID: 28812709 | |||
| Pathways in cancer | ko05200 | PMID: 28812709 | |||
| Renal cell carcinoma | ko05211 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_36585-2.3 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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