Gene detail

Detailed information of Bpl_scaf_36158-1.29 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_36158-1.29	FLAVIN MONOAMINE OXIDASE	Bpl_scaf_36158	164854	196871	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_36158-1.29

ATGGATGACAAGAAGAAACAAGTAAATACTGAAGAAGACGAAGATAGTGATAATAGTCGAAGAGCCAGCAGGCGCAAAAAGGCAAAAGTTGAGTACAAAGAAATGGATGAACAGCTGGCTAATATATCAGAAGATGAGTATTATTCTGAAGAAGAGAAGAAAGACAAGGACAAAGACAAAGAAAAAGACAAAGAAAAAGACAAACCAGAAAAAGAAAAAGAAGTTAAAGAAACAAAAGATGTGAAAGAGAAAGTAGAAAAACCAACACCAGTTAAAGCTGAAACTGATCCAGAGGTCCCAGAAAATGACAGTGAAAATGATGATCCAACTGGTCTAGAAGGAGCAGCATTTCAGAGTCGTGTTCCATTTGATAAAATGATATCACAGGAAGCAGCATGTTTCCCAGATATTGTACAGGGACCTCCACAATCCCAAAAAGTTTTCTTATATTTACGGAACAGAATTCTACAGCTATGGTTGGATAATCCAAAACAACAGGTGACATTTGAGAATGCATTACCTCAGATAGAACCTCCATATAACAGTGATGGTCCATTGGTGATGAGAGTACATGCTTATCTAGAAAGATTTGGGTTAATTAACTTTGGTGTTTTTAAAAGATTGAAGCCATTCCCATCTAAGAAACATGGTCGTGTTTTAATTATTGGAGCAGGAATAGCTGGGTTAGCTGCCGCTAGACAGCTGATGTCCTTTGGTATGGAAGTTGTTGTTTTAGAAGCAAGGGATAGAGTTGGTGGGAGAATTGCTACATTCCGGAAAGGAAATTATGTTGCTGACCTGGGAGCGATGGTTGTAACTGGCTTAGGTGGTAACCCAGTGACAGTATTAAGTCGACAGATCAACATGGAATTACATAAGATAAAACAAAAATGCCCTCTCTATGAATCAAATGGTGGAACAGTAAGTTGTCAGAAAAATTTGGTTCCAAAAGATAAAGATGAAATGGTAGAGAGAGAATTTAACAGATTATTAGAAGCCACATCATACCTATCACATCAAATGGATTTTAATTTAGTCAATGGTAAACCTGCATCACTTGGTCAAGCTTTAGAAGTGGTTATAAAAATGCAAGAAAAACATGTAAAAGTGAAACAATGTGAACATCAGACGAATATTATAGACATGCAGGAAAAGTTAAAAAAGACACAAAATCAGATGCTATCATTGAAAGAAAAAGTAGAAGAATTACATAGACAATGGAAAGAAGCATCTGAGGTGAAACCACCGAGAGATATAACGGCTGAATTCTTGGTGAAAAGTAAACTGAGAGATCTTGATGCTACATGTAAGAAAGAGTTGGAGGAAAAACTTCATGAATTAGAGGCTAATCCACCTAGTGATGTCTATTTATCAACAAGAGACAGACAGATTTTAGATTGGCATTTTGCCAATTTAGAGTTTGCTAATGCCACACCTTTGACCTTGCTGTCATTAAATCATTGGGATCAGGATGATGACTTTGAATTCTCTGGTAGTCATTTGACAGTAAGAAATGGTTACTCATGTGTTCCTGTTGCTCTGTCAGAAGGTTTAGATATAAAACTCAATACAGCTGTCAGAAAAGTTGTTTACACACCATCAGGAGTTGAAGTTACAGTAAGTAATGCTAAGAACAACACAAATTCCCAGACATTAAAAGGTGATGCTGTGTTATGTACATTACCACTAGGAGTTGTTTTGTGTTTTGACCGTGTATTCTGGGATCCTAGTGCTAATTTATTTGGACATGTTGGTAGTACTACTGCTAGTAGAGGAGAACTTTTCCTTTTCTGGAATTTATATAAGGCACCAGTCCTCCTAGCTCTAGTAGCAGGGGAGGCAGCAGCCATCATGGAGAATGTCAGTGATGATGTCATTGTTGGAAATGATTATGACCTGATGGCAACACCTGTATCCCCACAAGCTGGTACCCTACCTCGCCTGTTCTTTGCTGGAGAGCACACAATACGTAATTACCCTGCCACAGTACATGGAGCTTTTATGAGTGCTTTAAGAGAGGCTGGAAGGATAGCAGATCAGTTCTTGGGAGCACCATATACTTTACCATCCATGAAAACAGAGGGAGCTAAAACATGA

Transcript

Bpl_scaf_36158-1.29

GTGTTAGACTTCTTCCGGTTCCAATTGTCTTTTGTTCGAACACTCAAATTTCGAAAAAGAAGCTTTATTTAACATGGATGACAAGAAGAAACAAGTAAATACTGAAGAAGACGAAGATAGTGATAATAGTCGAAGAGCCAGCAGGCGCAAAAAGGCAAAAGTTGAGTACAAAGAAATGGATGAACAGCTGGCTAATATATCAGAAGATGAGTATTATTCTGAAGAAGAGAAGAAAGACAAGGACAAAGACAAAGAAAAAGACAAAGAAAAAGACAAACCAGAAAAAGAAAAAGAAGTTAAAGAAACAAAAGATGTGAAAGAGAAAGTAGAAAAACCAACACCAGTTAAAGCTGAAACTGATCCAGAGGTCCCAGAAAATGACAGTGAAAATGATGATCCAACTGGTCTAGAAGGAGCAGCATTTCAGAGTCGTGTTCCATTTGATAAAATGATATCACAGGAAGCAGCATGTTTCCCAGATATTGTACAGGGACCTCCACAATCCCAAAAAGTTTTCTTATATTTACGGAACAGAATTCTACAGCTATGGTTGGATAATCCAAAACAACAGGTGACATTTGAGAATGCATTACCTCAGATAGAACCTCCATATAACAGTGATGGTCCATTGGTGATGAGAGTACATGCTTATCTAGAAAGATTTGGGTTAATTAACTTTGGTGTTTTTAAAAGATTGAAGCCATTCCCATCTAAGAAACATGGTCGTGTTTTAATTATTGGAGCAGGAATAGCTGGGTTAGCTGCCGCTAGACAGCTGATGTCCTTTGGTATGGAAGTTGTTGTTTTAGAAGCAAGGGATAGAGTTGGTGGGAGAATTGCTACATTCCGGAAAGGAAATTATGTTGCTGACCTGGGAGCGATGGTTGTAACTGGCTTAGGTGGTAACCCAGTGACAGTATTAAGTCGACAGATCAACATGGAATTACATAAGATAAAACAAAAATGCCCTCTCTATGAATCAAATGGTGGAACAGTAAGTTGTCAGAAAAATTTGGTTCCAAAAGATAAAGATGAAATGGTAGAGAGAGAATTTAACAGATTATTAGAAGCCACATCATACCTATCACATCAAATGGATTTTAATTTAGTCAATGGTAAACCTGCATCACTTGGTCAAGCTTTAGAAGTGGTTATAAAAATGCAAGAAAAACATGTAAAAGTGAAACAATGTGAACATCAGACGAATATTATAGACATGCAGGAAAAGTTAAAAAAGACACAAAATCAGATGCTATCATTGAAAGAAAAAGTAGAAGAATTACATAGACAATGGAAAGAAGCATCTGAGGTGAAACCACCGAGAGATATAACGGCTGAATTCTTGGTGAAAAGTAAACTGAGAGATCTTGATGCTACATGTAAGAAAGAGTTGGAGGAAAAACTTCATGAATTAGAGGCTAATCCACCTAGTGATGTCTATTTATCAACAAGAGACAGACAGATTTTAGATTGGCATTTTGCCAATTTAGAGTTTGCTAATGCCACACCTTTGACCTTGCTGTCATTAAATCATTGGGATCAGGATGATGACTTTGAATTCTCTGGTAGTCATTTGACAGTAAGAAATGGTTACTCATGTGTTCCTGTTGCTCTGTCAGAAGGTTTAGATATAAAACTCAATACAGCTGTCAGAAAAGTTGTTTACACACCATCAGGAGTTGAAGTTACAGTAAGTAATGCTAAGAACAACACAAATTCCCAGACATTAAAAGGTGATGCTGTGTTATGTACATTACCACTAGGAGTTGTTTTGTGTTTTGACCGTGTATTCTGGGATCCTAGTGCTAATTTATTTGGACATGTTGGTAGTACTACTGCTAGTAGAGGAGAACTTTTCCTTTTCTGGAATTTATATAAGGCACCAGTCCTCCTAGCTCTAGTAGCAGGGGAGGCAGCAGCCATCATGGAGAATGTCAGTGATGATGTCATTGTTGGAAATGATTATGACCTGATGGCAACACCTGTATCCCCACAAGCTGGTACCCTACCTCGCCTGTTCTTTGCTGGAGAGCACACAATACGTAATTACCCTGCCACAGTACATGGAGCTTTTATGAGTGCTTTAAGAGAGGCTGGAAGGATAGCAGATCAGTTCTTGGGAGCACCATATACTTTACCATCCATGAAAACAGAGGGAGCTAAAACATGAACCAGGAACCAAGAACATTGTTTTATTTATTAGGCAGCAATATGTGTTCAGGGAGAAGGTTGCACAGATCTGTTGTATAGTAATGTTGTCATGACAACACAATTACAACATAAAGTTCTGCTTCTTGTTGTATAGAACTGTATTAAATTCAAATGCTCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01593	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan
PF04433	SWIRM	SWIRM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002937	Domain	Amine oxidase	Interproscan
IPR007526	Domain	SWIRM domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017366	Family	Lysine-specific histone demethylase	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR050281	Family	Flavin monoamine oxidase and related enzymes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11450	KDM1A, AOF2, LSD1; [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase	EC:1.14.99.66	Thermogenesis	ko04714	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_36158-1.29 global RNA-seq network