Gene detail

Detailed information of Bpl_scaf_35916-0.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_35916-0.6	FATTY ACID DESATURASE 2	Bpl_scaf_35916	120710	147641	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_35916-0.6

TAAACTCTTGGTATGTCTGCTGTTTTGTTTAACTTCAGATCATTAGTCGAATGATTTTTCCCCCAATTTGAGACCTGGATTCAAATGGGACAAGAGGGACAACAACGGGAGAACAAGGAAGCTGTTTATACTTGGAGCGAAGTAAAATTACACACCAAGAAGGATGATAAATGGCTCGTCGTGGATGGACAAGTCTACAACATTACAAACTGGGTCGGTAAACATCCTGGTGGAAACAGAGTAATCAGCCATTATGCCGGTCAAGATGCTACGGATGCTATTAGAGCTTTTCACAACGACTTAGATAAACTAAAGAAATATTTAAAGCCACTCCATGTCGGTGCTGTACAAGATATACAGAACAGAAGTATAGATGAAGACTTTAGACAATTAAGATCAACAGCAGAAAAAATGGGCCTGTTCAAGCCAAGCTTTCTTTTTTATGCTGTATCTCTAACTCACATTATTGGCTTAGAAGTGTTAGCTTATCTAATACTGTATTATTTTGGAACCGGATGGTTGCCGTTTATAATATCTATACTTTTAGTTGCCGCTATGCAGGTCCAGGTTTGTTATTTATCTCATGACTTTGGTCACCTATCAGTCTTTCACAGCAGGACATGGGACCATTTCTTTCATTACTCAACATTAGGATTCCTAAAGGGGATTTCTCCAGCTTGGTGGAATCAAATACACTATCAACACCATGCAAAACCCAATGTGCTGGATAAAGATCCTGATGTACGATTGGACAAGTTGTTTGTCGTAGGCGATGTGATGCCAGTAGAGGTGGCCAAATCCAAAAAGCATGTTTCTGTCCCCTATAATCATCAACACAAGTATTTCTTTATAGTTGGGCCACCTTTATTGTTTCCAGTAGTTTTCTTCATAACAAGTATGAGCTATATTTTCAAGAAAAAGTTATGGCTGGATGGAGTTGTGACGTTCCTCTACTTTTTCAAGTTTTTCTTCTTTATGGTACCAATGGTTGGATGGGGATGGGCCATCTTCTACTACGAAGTTTTCAAGTTAATAGAGTCCACTTGGTTTACATGGGTTGCACAATCTAACCATATACCTATGAATATAGATCATGATGCTGAGAAGCCTTGGTTGAAACTTCAATTAGCAGCCACTTGTGATGTTGAACAATCATTCTTCAACGACTGGTTTACAGGGCATCTAAACTTCCAGATAGAGCACCACTTGTTCCCAACGATGCCTCGTCATAACTTATACAAGATCCAACCTTTGACAAAATCTCTATGCAAAAAACACGATATTCCGTTCATTATAAAGCCCCTGTTGACATCTTTTATAGATATAGTCAAGAGTCTCAAGCACTCTGGAGATTTGTGGAATCTTGCATACCACGCCCACCATTTGTCATGATGACTTGTCTATTAATTAGACTTATATCATGGTCTCCACACACTAGTGCACACGTGGATGACCAAATAAATGTACTCTATTTTTTCTAATGTATTTTAACACAATGCTTAATTTAACATTAGTATTGAGACTTTTTGTTGTTGTTTCTTAATGAACCAGTCGTTTAAACAGGAAGCCATTTTGTTTGTTTGGTCGTTTTATTGATCTTTATCCGCCATCCACAAACATCTAACAACATCCTATATCGGTTCACATCTTGTAATCTTTCCTTCACATTCGGAAATTCTCTACCTCCTTCATAAAACCGGTATGCTATTCAATGGCTACAATTATGTAAAGTTTGACACTGATTGGTTGCTTGAAAGGTAAATCTCGATATGGAATAATGGAATAGTGGATCACAAGCTTATAAATAAAGAAAGATATACCAAACATTTAATTTGAATTTGAAAGTAGGATGAACTATCAGACACATACTAAAAACGGAAGTAAAAATGAATGAACCATCAGACACATACTAAAAACGGAAGTAAAAATGAATGAGCCATCAGACACATACTAAAAACGGAAGTAAAAATGAATGAACCATCAGACACATACTAAAAACGGAAGTAAAAATGAATGAGCCATCAGACACATACTTAAAACGGAAGTAAAAATGAATGAACCATCAGACACATACTAAAAACGGAAGTAAAAATGAATGAACCACCAGACACATACTAAAAACGGAAGTTAAGAAGGAGCCTTAATTGCTCTTGTTTTTCTTCAACAGTTCAGTCACCACGATGTTTTCAATGATATATGCATAGTGCATACTTAAATGTTGGTATATATGTTGGTATAAATGTTGGTATATATGTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF00487	FA_desaturase	Fatty acid desaturase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001199	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR005804	Domain	Fatty acid desaturase domain	Interproscan
IPR012171	Family	Fatty acid desaturase	Interproscan
IPR036400	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19353	FATTY ACID DESATURASE 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006629	Biological Process	lipid metabolic process	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016717	Molecular Function	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10226	FADS2; acyl-CoA 6-desaturase (Delta-6 desaturase)	EC:1.14.19.3	Fatty acid metabolism	ko01212	PMID: 28812709
			alpha-Linolenic acid metabolism	ko00592	PMID: 28812709
			Biosynthesis of unsaturated fatty acids	ko01040	PMID: 28812709
			PPAR signaling pathway	ko03320	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_35916-0.6 global RNA-seq network