Detailed information of Bpl_scaf_35877-1.18 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_35877-1.18UBIQUILINBpl_scaf_35877122891133372-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UFD/UBQ|UBQ_Other
Ubiquitin FamilyULD|UFD/UBQ|UBQ_PIM
Ubiquitin FamilyE3|E3 activity|RBR

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00240ubiquitinUbiquitin familyDomainInterproscan
PF01485IBRIBR domain, a half RING-finger domainDomainInterproscan
PF17976zf-RING_12RING/Ubox like zinc-binding domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000626DomainUbiquitin-like domainInterproscan
IPR002867DomainIBR domainInterproscan
IPR003977FamilyE3 ubiquitin-protein ligase parkinInterproscan
IPR015496FamilyUbiquilinInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR041565DomainParkin, RING/Ubox like zinc-binding domainInterproscan
IPR044066DomainTRIAD supradomainInterproscan
IPR047534DomainE3 ubiquitin-protein ligase parkin, BRcat domainInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR10677UBIQUILINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0031593Molecular Functionpolyubiquitin modification-dependent protein bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04556PARK2; parkinEC:2.3.2.27
Protein processing in endoplasmic reticulum ko04141PMID: 28812709
Ubiquitin mediated proteolysis ko04120PMID: 28812709
Mitophagy - animal ko04137PMID: 28812709
Parkinson's disease ko05012PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_35877-1.18 global RNA-seq network
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