Gene detail

Detailed information of Bpl_scaf_35496-0.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_35496-0.4	LYSYL-TRNA SYNTHETASE	Bpl_scaf_35496	44013	66820	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_35496-0.4

GCTGACCTCGATATCGAAAGCCGGTCAGATTTGGCGCACGTGTAAAACTTGTCTTGTTAATATTTACCAGAAAAATGGGAGAAGAAAATTTAAGCAAAAAGTTTTAAGATGTTTGGCTCTGCATTGAGAAAAAGTTGTTTTTGGTTTGTTCACCGAACACAAAATTTGAGAGGTCAAGGCATTGATTTGTTATTACCAACAAGAACAACACAACTTACATATGCACAATGCAGTGAGTTGAAAAGACGAATGAAAGCAGATAAAAAAGCAAAGGAAAAAGCAGAAAAAGAAGCAAAACAACTGCAACCAGCAAAAACAAAAAATGAGTCTGAAAAACAAAAAGATGATGAAGAAATTGATGCAAATGAATATTTCAAACTGAGATCAAAGTCTATAGCACAACTTAAAGACAAGGGAGATAACCCTTACCCACACAAATTCCACGTACAGATATCATTGACAGAGTTTATAGAGAAATATAATGATACTCCTGCTGGCGAAACTCATGATGTGGAAGTCAGTGTTGCAGGAAGGGTCCATGCCAAGAGACTGCAAAGTTCAAAATTGATATTTTATGACCTAAGAGGAGAGGGGGTTAAACTTCAGGTCATGTCAAATGCCAAATTTTTCCAACCAGAAGATTCATATGAAGAAATAAATGACAAAATAAAGAGGGGTGATATAGTTGGTGTTGTTGGAAAACCAGGTAAAACAAAGAGAGGAGAATTGAGTATCATTCCTACAACAATGACGTTGTTATCACCCTGTCTACATCAACTACCACACTTATTTTATGGTCTCAAAAACCAGGAAACAAGGTACAGACAAAGATATCTTGATATGATTATAAATGAGCCAGTCAGACAGAAATTTATTACCAGAGCTAAAATTATAAACTATGTTAGGAAATTCTTTGATAATCAAGGTTTTCTGGAGGTAGAAACACCTTTGATGAACATGATCCCAGGTGGTGCCACAGCTAAGCCATTTATCACGCATCATAATGAACTTAATATGGACTTGTATATGAGAGTCGCACCAGAACTGTATCTTAAAATGTTAGTGGTAGGAGGTATGGACCGTGTCTATGAGATTGGACGACAGTTCAGGAATGAAGGCATAGATTTAACTCACAATCCAGAGTTCACAACATGTGAATTTTATATGGCTTATGCTGACTACCAAGATCTTATGGTCATCACAGAAAATTTGGTATCTGGTATGGTCAAAGAGCTGACCGGGGGCTATAAAGTTACGTATCATCCTGAGGGTCCAGATGGACCTGTGTGGGATGTAGATTTTACACCTCCGTTTAGAAGAATACGCATGATACCAGAACTGGAATCAAAATTAGGTGTTAAATTCCCTCATCCTAATGACTTTGGTAAAGAAGAGTCCAGAAAATTTTTTGATGATTTATGTAAAAAACATGAAGTAGAATGCACTAATCCAAGAACAACAGCTAGATTGTTGGACAAATTAGTTGGTGAATATATAGAAGAACAATGTATACATCCTGCCTTTATTATAGACCATCCACAAATTATGAGTCCTTTAGCTAAATGGCATAGGTCATTACCAGGTTTAACAGAACGTTTAGAAATGTTTATTTGTAAAAAAGAGGTGATAAATGCCTATACAGAGTTGAATGATCCAGTTGTTCAAAGAGAGAGATTTGCCCAACAGGCCAAAGATAAAGCAGCTGGGGATGATGAAGCCATGTTTGTAGATGAGAATTTCTGTACAGCCTTAGAGTATGGCTTACCACCAACAGCTGGCTGGGGTCTTGGCATTGATAGATTGTGCATGTTTCTGACCGACTCCAACAATATAAAAGAGATACTGTTATTCCCTGCAATGAAACCTGAAGACCAGAAAGCACAAGCTAAAGAAGGGGAAGCTGGAAACAACAGTTAACGTAGAGCATGGTGTCTAAAATTGTTATTATTATTTATTCTGAAGGAACTGGTGAACATTAATGTGATGAACAATACTACATGTGTATTGAAAGATCATTAAACAGAAATTTCTATCATTGTTTAGTTAACAGGATTTCATTTGTTAAAATTTATTTATATGACTCTGTTTATTAATTGATATTACATTATGTTTTTTGTTGTTTTTTTTTTATTTGGGTGGGTAAAATTTATAGGGGAGGGGACATCAGATTTATTTTTAGTTGTATGAATTGCCGTCAGGATTATATTATGTATCATTTACAATATTATACATTAATCAACACAAGTGCTATTATTATGATTATTACATTTTTGGGGGTGGGATTGGGGAGAGGGGGTAGGACATCAGATCTATTTTTAATTAAATGAAATGCTGTCATGATAATATTATACATGAATCAATAGTCAAAGGTGTGTGGAGGAAAATGTCTTGCAACAATGTCTATAGGTTGATGAAATAAATATGTGTTTCTGTCTGTATTTTTAAATGTATCTTGTCTTTAGAATTAAAACTGTTACACATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00152	tRNA-synt_2	tRNA synthetases class II (D, K and N)	Domain	Interproscan
PF01336	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002313	Family	Lysine-tRNA ligase, class II	Interproscan
IPR004364	Domain	Aminoacyl-tRNA synthetase, class II (D/K/N)	Interproscan
IPR004365	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR018149	Domain	Lysyl-tRNA synthetase, class II, C-terminal	Interproscan
IPR034762	Family	Bacterial/eukaryotic lysine-tRNA ligase, class II	Interproscan
IPR044136	Domain	Lysine-tRNA ligase, class II, N-terminal	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42918	LYSYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004824	Molecular Function	lysine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006430	Biological Process	lysyl-tRNA aminoacylation	Interproscan
GO:0017101	Cellular Component	aminoacyl-tRNA synthetase multienzyme complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04567	KARS, lysS; lysyl-tRNA synthetase, class II	EC:6.1.1.6	Aminoacyl-tRNA biosynthesis	ko00970	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_35496-0.4 global RNA-seq network