Gene detail

Detailed information of Bpl_scaf_35487-3.21 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_35487-3.21	CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR	Bpl_scaf_35487	285086	317672	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_35487-3.21

ATGTCGGACTTGGATGTGGTTAGTTCATCCACCGACCTAGTATCCTCCGTGTATGATCCTTCCAGTCATTCAACCGTTCCCGACTCTAGTACAGGATTGGTTGTGGCTGAAGACAGTATAACTAGTCTAGATCCAGATTCCCTCAGTGTGTCATTAGCACCAAGTCTGGCCAACCCTACCATTCAAGGATTACTGTCTTCACCTGTCAGTCTGACTAATGCCCAGCTGATAGGACATCCAGATCATGGCATACAAATTATTACCTTAAACAATCCTAATGAGTTGCTGTCCACGGGGAATCCAGACTCCTCTAGATGGCAGTTAGCTACAATTATAACTGTTGGAGATGAACATGGAGAAGAAGACAAACACGATTATTCAGGGTTGGGCGCTAATTCAGCAGAACTAATACCAACCACATCTGATGATGGTATACTGATGCCACCCCCTCCTCCCCCGCAGGCAATGCCCTTACCCCCTGATGCTCCAGAATGGGCACGGAGGATCAAATGTTGTGAGAAAATTGGAGATTATTACAGAGGCTATGTGGAAAGTGACATGGACCTTGACCTCTTATTGACCTTTCATAAACAACAAACACAGAGTTTGTGGGGTACCAGACAATCACCCAGTCCTGCTAAACCCTCAACAAGATTGATGTGGAAATCACAGTATGTACCAATGGATGGCATACCATTTGTCAATACAGGAAGCAGAGCAGTTGTGATGGAGTGTCAGTATGGTCCTCGGAGAAAAGGAAACCCTCACAAAAAAATAGAGAATTCTTCAGGAGACTACAAACTGACATGTCCAGCAAGAATTTATGTAAAGAGGGTAAAGAAATTTCCTGAGTATGCTGTAGATCTGACTCAAGATAAAAAAAATCTGAAAATAGAAATGGATAGAGCATTTCATGAATTGAAACAGAATGGATTTAGTGGAATTGGACAAGAGAGATATTATGTACAACTACCAACAGAAAAGGCACATGAGTTTCATGAAATGATGCCAATTGTCATTACACCACCAGCTCCAATTGAGACAGAGGCTGACTCAGAACAACAAACTCACAGGCTTGATCCAAGAGTAGCCCAAAAAATCAGAGATATTATAGCTAGTGGTGAAACTAGAGTTTATGCTGTCAGAAAACAATTAAGAACCTTTGTTACCAGAGATCTTTATCTTGGTGGTAATGTTCCTGAGAGACATGACCTCACTTTGTTCCCAACAGTCAATGATTTAAAGAACCATATCCACCAAGCCTTAAAAGATGTAGAAAATGGAACTCTACCACTCACAGCACCTACTGTTAATGTTGAAATTGTTGGTAATGACAGTTCTCAGGGATCAGAATTAGATCAGTCACTATGGTTACAACAAGGAGGGGGATCAGATGGAAGTGAACCAGTCCCTGAAACAGTTACAGTAACATTAACGCAAACACCAGGTGAAGAAGGTCATCATGTTGTATCTAGAATAGAAACACATCTGAGTGATGGCTCCACTAGAGTCAGTACGACCTTGACCCCTGAAACAGCTCAGTTGTTGTCAAGGTTACATCCAAATATGTTCCCAGCTGGATCATTACTTCAGCAACAAATTGACCAAGCAGTTACATCAATATCTCAGAAAATAATGGTTGATCCAAAGCCAGAACCATCTAACGAAATCTCAACAGAAGAAAATATAAGTTTTTCTTCCGTTGACGGTTTCATGCCAAGTTTCAGTACTACAGACAGTTTAGTAACTAGTTTTAATTCTGTTCCAAATTTAACGATAGATGCTTTATCGACAGAGAGTAGTATGAATTCCCAATATACAATCGAAAATTTAGAACAAAATATCAGCTGTGAAAATCTGGACCAAAGCATGAATTCAATAGAGGATACGTCACAAGATATAGAAAATGGGAACAGCAACATTTCAAATGTCATTTCTGATATGGATAATAGTGAAAATTCAGAGAACAATGAATCTCAATCTGAATCAAATGAACAAAAAACTGATATGTCTAATATTGAAAAAGATGAAAGTGAAAATTCTCATTTACAAATCAACCCATTGCCAACAGACTCATCAAATAATCAAATAAATGGTGCATCATCAGAGGTTACGCCTCTTGAAATTAACTCTTTGTCGGAGGATATGACTGGTATTATACAAATACCATATTCAGCAAACGGTTTACAAATTATACCAATATCTGGTGGTGCAAATAATTTATTTAATTTTTCAACAAATTCTGGATTTTCATATCCGATCCAAATAGGACATATTTCTTCCGATGACGCCAGTGGATTGACATATTCATCAACAGATGGCGCTGTGTCAGATATACAGATTGATAGTTCTCAGCTAACATTTGCTAGTGACAATATAGATTCTACTCAGCTGGAAGAGTTCAGTATAAAAGTCAACCAGAAACAAGACATCGATCAACAAAATGTGCAATCAAATCAAATAAGTTCAGAAATGTCAAGGGAAGAAATGGAATCTGCGATGGATGAGTCTTGTACATCTTTGATAGAAGGGAATCTTGAAGATACATGA

Transcript

Bpl_scaf_35487-3.21

ACTTGCAGTTGAAACATGTCGGACTTGGATGTGGTTAGTTCATCCACCGACCTAGTATCCTCCGTGTATGATCCTTCCAGTCATTCAACCGTTCCCGACTCTAGTACAGGATTGGTTGTGGCTGAAGACAGTATAACTAGTCTAGATCCAGATTCCCTCAGTGTGTCATTAGCACCAAGTCTGGCCAACCCTACCATTCAAGGATTACTGTCTTCACCTGTCAGTCTGACTAATGCCCAGCTGATAGGACATCCAGATCATGGCATACAAATTATTACCTTAAACAATCCTAATGAGTTGCTGTCCACGGGGAATCCAGACTCCTCTAGATGGCAGTTAGCTACAATTATAACTGTTGGAGATGAACATGGAGAAGAAGACAAACACGATTATTCAGGGTTGGGCGCTAATTCAGCAGAACTAATACCAACCACATCTGATGATGGTATACTGATGCCACCCCCTCCTCCCCCGCAGGCAATGCCCTTACCCCCTGATGCTCCAGAATGGGCACGGAGGATCAAATGTTGTGAGAAAATTGGAGATTATTACAGAGGCTATGTGGAAAGTGACATGGACCTTGACCTCTTATTGACCTTTCATAAACAACAAACACAGAGTTTGTGGGGTACCAGACAATCACCCAGTCCTGCTAAACCCTCAACAAGATTGATGTGGAAATCACAGTATGTACCAATGGATGGCATACCATTTGTCAATACAGGAAGCAGAGCAGTTGTGATGGAGTGTCAGTATGGTCCTCGGAGAAAAGGAAACCCTCACAAAAAAATAGAGAATTCTTCAGGAGACTACAAACTGACATGTCCAGCAAGAATTTATGTAAAGAGGGTAAAGAAATTTCCTGAGTATGCTGTAGATCTGACTCAAGATAAAAAAAATCTGAAAATAGAAATGGATAGAGCATTTCATGAATTGAAACAGAATGGATTTAGTGGAATTGGACAAGAGAGATATTATGTACAACTACCAACAGAAAAGGCACATGAGTTTCATGAAATGATGCCAATTGTCATTACACCACCAGCTCCAATTGAGACAGAGGCTGACTCAGAACAACAAACTCACAGGCTTGATCCAAGAGTAGCCCAAAAAATCAGAGATATTATAGCTAGTGGTGAAACTAGAGTTTATGCTGTCAGAAAACAATTAAGAACCTTTGTTACCAGAGATCTTTATCTTGGTGGTAATGTTCCTGAGAGACATGACCTCACTTTGTTCCCAACAGTCAATGATTTAAAGAACCATATCCACCAAGCCTTAAAAGATGTAGAAAATGGAACTCTACCACTCACAGCACCTACTGTTAATGTTGAAATTGTTGGTAATGACAGTTCTCAGGGATCAGAATTAGATCAGTCACTATGGTTACAACAAGGAGGGGGATCAGATGGAAGTGAACCAGTCCCTGAAACAGTTACAGTAACATTAACGCAAACACCAGGTGAAGAAGGTCATCATGTTGTATCTAGAATAGAAACACATCTGAGTGATGGCTCCACTAGAGTCAGTACGACCTTGACCCCTGAAACAGCTCAGTTGTTGTCAAGGTTACATCCAAATATGTTCCCAGCTGGATCATTACTTCAGCAACAAATTGACCAAGCAGTTACATCAATATCTCAGAAAATAATGGTTGATCCAAAGCCAGAACCATCTAACGAAATCTCAACAGAAGAAAATATAAGTTTTTCTTCCGTTGACGGTTTCATGCCAAGTTTCAGTACTACAGACAGTTTAGTAACTAGTTTTAATTCTGTTCCAAATTTAACGATAGATGCTTTATCGACAGAGAGTAGTATGAATTCCCAATATACAATCGAAAATTTAGAACAAAATATCAGCTGTGAAAATCTGGACCAAAGCATGAATTCAATAGAGGATACGTCACAAGATATAGAAAATGGGAACAGCAACATTTCAAATGTCATTTCTGATATGGATAATAGTGAAAATTCAGAGAACAATGAATCTCAATCTGAATCAAATGAACAAAAAACTGATATGTCTAATATTGAAAAAGATGAAAGTGAAAATTCTCATTTACAAATCAACCCATTGCCAACAGACTCATCAAATAATCAAATAAATGGTGCATCATCAGAGGTTACGCCTCTTGAAATTAACTCTTTGTCGGAGGATATGACTGGTATTATACAAATACCATATTCAGCAAACGGTTTACAAATTATACCAATATCTGGTGGTGCAAATAATTTATTTAATTTTTCAACAAATTCTGGATTTTCATATCCGATCCAAATAGGACATATTTCTTCCGATGACGCCAGTGGATTGACATATTCATCAACAGATGGCGCTGTGTCAGATATACAGATTGATAGTTCTCAGCTAACATTTGCTAGTGACAATATAGATTCTACTCAGCTGGAAGAGTTCAGTATAAAAGTCAACCAGAAACAAGACATCGATCAACAAAATGTGCAATCAAATCAAATAAGTTCAGAAATGTCAAGGGAAGAAATGGAATCTGCGATGGATGAGTCTTGTACATCTTTGATAGAAGGGAATCTTGAAGATACATGACCTTGAAAAAGACACCAATATTCATAGAAAGATTGTTATTACTTACAGTGTATGTTGCCATGATTACATGGTACAGTATTTACATGATTTAGTTATAATTCAGTTATAATTCAGTTCATAACCATAATTTGCATGGTTAATAATTTCTTGTCAGACGTTTGTACTGCATGTCAAAACAAAATTTTGTACGAATATAGTTTTTTTTCCATTTATTGCACGGCGAAGGAAATTTCACAAAATCAAAGCAGTGAAATGTGAATGGAGAAATTTGATATGACTTTTTATAATTATTTGTTGTTATAAAGATATGAGTAAAAAAAAGTCTGGTAATTGGGATGGCATCCTGAAATATGCCTGTTTTTATCTATTATTTTCACACTTTCTTTTGCTCTGATCTGAGCTCATGTAATTTAAACATGGAAATATATTTTCATAAATTTGTTGGATAATTTTGCAATTGAAATGTATTTTGGAGGATTAGCCATGTATTATTTTCATCTTGCCATCAGATGGTGTTTATGTGACATTTTTTATAATTAATGGTTATAAACTGAATTTTGACTTCATTTGTTTTGTCTGTTCTTGTATACAATAGAGTGCTTCTAAAAGTAAATTTTTTAATATTGTAATAATGATTTGATAACAGTCGAAATTTATTTGAGATTAATTTCATAAATTAAGTATCCCAAACAAGGTATGGGAGACTTACAGTTTTTTTCTCTGTTTTTTATTTAATTTATTATTATTATTATTTTTTGTTCATCTTAATTCTCACATTTTTTTGGCAGTTTTATTACAATATTTTCAGAGGTACTGTGCCCCCCCCCCCCCTTATAAGTACAGTATCACCAAAGATTTCAGATGCACTGCTATAATACAATGCTAAAAATTTTCCCCCTCAGGAGAGGCCACTTCTCGTATAAAGCCACTTTTTAATTTCAGAAGAGGCAGACTTTTTTTTAGGTGGACTACTGTCCAGTTAGTAGCATTTAAAGTCTGCCGTTAAATTTTTCACATTTTACTAATCTCCTGCAAAACTGCTCAACAAAGTGGATTCAAACTTGGTAAGGATGATACTTTGGAAGGGTAAATTCAGACTGGTACAAATGAAGCTGGTTCTCAATGGGGAGGGACTAGTAAGGTGCCTCAAATTAGAAGTTATATAAATCGTTATGTGATAGGTGATAATATAAATCTTTGTCAGGTGAACAATAATGGTTTAACAAGTCTGTGTTAACTGTTCTTTTATTGATCTTATGCTTTACAACAACAAAAATGATGTCTTAAAAGGCAGAAAGCAATTTGATTTTTTATTTAGTACAAATATCATCAAAACTTCTACCTAAGATATAGGTGTCACTAGCACATTTGTGCTATCTTGTTTATGTCTGTTAATGCTCTCAAACATTTTGATATTAATTAGTTTTTTCTAATCTTTTGATTTTGAGTGTTATTTATAAAATGGTTGTTTCAGAAACATGTCATGCACACTAAATATAATATCTACATTTCTATTCATCATTGATTTTGTTGATGTATATTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15299	ALS2CR8	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029309	Family	Calcium-responsive transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14694	CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_35487-3.21 global RNA-seq network