Gene detail

Detailed information of Bpl_scaf_3520-3.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_3520-3.3	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG	Bpl_scaf_3520	376115	388712	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_3520-3.3

GCCAATTGTATGCTATGCAGCATGGAATGGAAATTGACAAATCTTCAAAGGAAGCCAGAGCATTCTTATTGGCACTCATGGACTATTTAGAAAAGTTCAAAACAACAAATAATACTAATGAAGCAATCACCAGTGAAGTTGTTGGTCAAGCTCATATGGAGAATTATGCCTTGAAAGTTTTCCTGTTTGCTGATAATGAAGACAGAGCTTCAAGATTTAACAAAAATGTAGTGAAGTCATTTTACACAGCTGGTATGCTATTTGATGTGTTGGGTTGTTTTGGAGAAATAAGTGAAGATATACAGAAAAATAGAAAGTATGCAAAGTGGAAAGCAGCTTATATACATAAATGTTTAAAAAATGGAGAGACTCCTGAACCAGGTCCACTTGGTGGGGAAGATGGTGAAGAAGGTCTGGCACCAGCAAGTAATCTACAGCCAGGGCCATCATCACCACCCTATCCTACAAATAACTTACCAACACCTAGTAATCAACCACCACAAGTGGGAGCGTTTGCTCCTCCAACCACACCTCAAGACCCACCCCAAATACCACAACAACCCTCTCCATCACAGTCTTATTACCAGCCAACGCCGGCCCCAGCTGCGGCCCCGGCAGCTGCAGCGTGGACACCTCCGGCTAATACAAAAGGTGCACGTCTTAATGCAGAACAGTACCAGAAAGCTTTAAAACTGTGTAAATATGCTAGTAGTGCCCTCCAGTATGAGGATTCAGATACCGCAATATCAAATCTAACAAAAGCTCTTAAGCTTCTTACTACAGGCAAAGAAAGTTAGATTGTTTTATATTACCTTATTTATTACTTGTACAAATATCTGGTATATGTGTATTATAAGAGAGTTAGCCGTAGATCAATGGTATAACTTTGTGTAGAACGTGTTTAAATATGTTACACAGAAATTTATCAGTTTCTATACTGGTACCATTTGATTTTTTCTTATTACATAATTAATGAAATTTGCTTCTTTATGAAAAAGTGTGAACAATGATTGGTTAACAATTCAACCAATGTCATCAACATTAACAATCATCCTTCACCTCAAATCATTGAACATAAAAAATTGTATTAAACTCCAATATTTTTTTTTTTTCCATTATCACTGTGTTCCTTGTTTTTTTCAATAAGATTTTGCCAATAAAATATCAATTTTTTACTATATGAATTTTGTAATGAAAAACTTTTGCTGAAAAAATAATATTTGAATTTTTTGCTGATGAAAAAATAGGAAACTACCTTGTTTAATGGTATACATAATGCTAAAATTGTCAGATTTCAAATGAACAAAACCTAGATAGCAAACTTTAGACAATTCATTCATAAAACTTTAAAAGGTAGTTGCCAAAAAGTCTGATAATTATTTTTTTTGAATTATGTTGTTCAAACTTTATCTGTTTTGAAATTAAGTGAAGAAATATGAGAGATGCAATTAACAAGTGGAGGATGCTTTGTGTTATTTTAGATATGCTAATGCTACAACAAATATTCCAGTATATGATCATTGGTGTAAATACAAACTGTTATTTATAAGTTTTGATATTTAGCTTTGTGAAGGATTGGGAGTACAATATATATATATTATCACTGTTTTTTGTACACAGGATATGGTATATTTGTATATATATATAATGCAGGGATGATTCTTTTCAATTATTTAACTGATTTCAGCTATTTTCCTCTGAAAATTGCTGGACACGGTCAGAACAGGTCACAATGACAATTTTTAAAGGTGTAGATGGTTTCAGCTATTTTTCATTGATTTTAATTATTTTATTTTCTAACCAGGATCATCCCTGATAATGACTATAATTAATTATTTTACCATGAACTTGTATTGATGATAGATAAATTTTAATATCAGATGATATGTAATAGATACTCTACATCTCACATTCTGTTTTAATGTTGTCATAGATCTTTTTAGAATAGTGTTTTTATTAGTTCACTTCATGACCTCCAAGTGAGTCTTTTGTATCACTTGTCATCTGTTGTTGTTATTAAATTTTTCACATTTTATACAACATTATGTGATAAAGTTTGCCTGTGATTTGCGACAGGTCGGTGATTTTCTCTGGGTACTCCGGTTTATTTCACAATAAAACTGACCGCTACCATATAACTGAAATATTGTTGAAAGTGGCATTAAACACCATAACCCAAAACCCTTTACATATTTTACTCCTCTCCTGCAAAATTGTCTAACCATAGGGAGGTACTAACAGTGAAATTATTTCTTCTCACATACCACTGGAAATATTTGTGGTGCAGCATTATTTGGATATGAAGATATAGATTTGCACAACCGAATATCTTAGGTTCCATGGGTCATGTGTGCTGGAATCCAAAGTTTCACCTATCCTGTAGTGGTGAAGTCTATATAATGTTTAAAACTGAGTTTCACCATTTGTTTAAATAAACATACAAATTGAGAAAATAATTAAAAAAAAGATTTTCTTAAGAAACAATAATGCAAATACAAATTTGAATGGGATGAATTATCATTTTGATATACAACTTCGAACCATAGATAAAAATGAAGACCCCAGGTATATGGGGTTCAAACCATATTAGGGTCAAAACATTAAAATAGGCTGTATAAGAAAAAATATTCAAAATATTGTCTGTAATAACTAAAACTGGAAATTCAATTGTAAATACGGTGTAGGCATGAAGCACATTGTGATATGAAGATTCAATTTTGTATCAATGAATGTCCTGTTGTCTGTTGAGTTCAAGTCCTAGGGAATTAAAATTAGTGAAACAGATCAAACTTATCATATAAAATTAGACTTTATTTACTAGTTAATAGACTTTTTGAGTGTAATAACGAGTGGATGTTAGCAGGATGTGTGGGTGAACCAAGGGATTATTAAATCTTCACCATATTTTTGTTTCTTTACATAGATAAAATTTGCATTTTATGTCATTTTAAATATTAAGCACACTCTATGAATGTTAGAGTTGTGGAGTTTGTTTTTTTAAATACACCTTCAAAAATATTTGACAGGCATGGTCACTAGTGTTCCTCCCTATGAAGCTGACATAGTTTCATAAATATGCTGTTCATATCAACGTGAATTTTTGTGTATCATTCTATTAATAACACAATACCCTGAGTGATCTGATGATAAGCTCTGCCCAGAAATTTTGTCTGTCGGTACTACTGCAAATGCCAGTCTAAATAGATTTAAGGGACCTGAGACTACATGTATTAGACTGGTTGCATGTTTTAGAAATTTTTATGAAATCCTACGATGACCAACAGTAGTTTTACTTCGTAAATTGATCTGATATGAGTGTGCCTAGCTGGTATGATCTATCTTCCAACTAGTAGTATTGTAGATATACTAGTCAATGTTTTTATATGATAAAATGTAATTTCAGTAGTTTGATGTCATTTGTACATAAGGTTTCTCAAGATGACTGTACATTTGTATGGCTGTTACGTCTATTTCATATTAAAGTTTTGAAGTTATCAATTTTGATTTTCCTGAATCCTTAACCTACAACAAATATATTGAATGCTCTTAGGGATCCTTCATTTGCTTAGCTCTCCCTTGAGATAAATAATGATCAGTCTCTTACCTTTCGATTTTCTTTGAATCTATAGTCAACCGTATCGGTGGTGTAATGGTTAGCGTACTAGGCTTGAGTGCAACAGATAATTGGTTGGAGCTCCGATCGGTCAAACCAAGGAATATAAAATTGGTATTTGTTGTTTCTCCACTGAGCTTGCAGTATTAAGGAGAAAGCAGAAAGACTGATTGGCTCAGGAATAAGGATAATGTGTCCAGGTGAGGTCACATGTCTATCAGCGAACTGTTGTTTCAGTGAACTAGCACTATAAAAATTTGACTCAGCGTGTTGGTCTAGAACAAAGGCGAATCATCATCATCACATCATTTAAAATTAACTTCTTGTTATGATATAGCTGAATAATTGCTGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04652	Vta1	Vta1 like	Family	Interproscan
PF18097	Vta1_C	Vta1 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023175	Homologous_superfamily	Vta1/Callose synthase, N-terminal domain superfamily	Interproscan
IPR039431	Domain	Vta1/callose synthase, N-terminal	Interproscan
IPR041212	Domain	Vta1, C-terminal	Interproscan
IPR044538	Family	Vacuolar protein sorting-associated protein Vta1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46009	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005771	Cellular Component	multivesicular body	Interproscan
GO:0032511	Biological Process	late endosome to vacuole transport via multivesicular body sorting pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12199	VTA1, LIP5; vacuolar protein sorting-associated protein VTA1	-	Endocytosis	ko04144	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_3520-3.3 global RNA-seq network