Gene detail

Detailed information of Bpl_scaf_34879-4.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_34879-4.15	GDP-L-FUCOSE SYNTHASE	Bpl_scaf_34879	515736	540315	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_34879-4.15

CGTCATACAACACAACAGCTGAAACACACCATTAGTGAACATTGATTCAACACAGACGACAAACACATCGACATATTTATAAAAATGTCTGAGAAGAAAGTTGTATTGGTAACAGGAGGCACAGGCCTTGTTGGTAGAGCTATAGAATTCATAGCAATAGGTGAACAAAAATGTGCCGATGAAGAATGGCATTTCCTGTCCTCAAAAGATGGAGATTTATCTGATAGAGCTGCCACGGAAGCAATATTTAACAGAATCAAACCTACTCATGTCATTCATTTAGCTGCAATGGTGGGAGGATTATTTAGAAATCTGAAATATAATTTAGATTTTTATAGAATTAACACCTTGATAAACGACAATGTCTTAAATATCAGTTATAAGACAGGTGTGAAGAAGGTTGTTTCCTGTTTATCTACCTGTATATTTCCTGACAAGACAACTTATCCTATAGATGAAACCATGGTACATAATGGTCCCCCACATGATTCTAATTTTGGATACTCATATTCTAAGAGGATGATAGATGTACAGAACAGGGCCTACCATAAACAACATGGTTGTCAGTTTACCTCCGTAGTGCCAACTAATGTCTACGGACCATATGATAACTTCAATTTGGAAGATGGACATGTTCTACCAGGTTTAATACATAAGATTTACATGGCTAAAAAGAACAACACACCATTTACAGTATGGGGAACAGGGTCACCAAGAAGACAATTTATATATTCTAGAGATTTAGCTAGATTAATGATCTGGGTTCTAAGGAACTACAATGAAATAGATCCCATTATACTCTCAGTTGGAGAAGAAGATGAAGTGAGCATTAAAGAGGCAGCTGAAACTGTGATTAAAGCCATGGATTTTAAAGGAGAGGTAGTGTTTGATACAACCAAGTCTGATGGTCAATTTAAGAAGACTGCTAGTAATGCAAAACTTAGGAAATATTTACCAGACTTCAAGTTCACACCATTTGATAAAGCTGTTAAAGAATCATGTGACTGGTTTGAACAGAATTTTGACACACTCAGGAAGTGAAAAAAATCCTAGCATTTACAAGTGGGACAATCATGATGGTTTAAGTATCTTATTGTACTTTCTAACTGAGACTTTCCAGTTCCTCCAGCTTCAAATTGTAGTTTTCTGTTATGTGTTCAGATTGTTTATATTGTTTGAACTTTAAAAAAAAAACGCTACACAATTCTTATCAGAAATATACCGGTAATCAACTGCATTGGGTTCATCAAATTTTCTCATACAACTGGAATATTCCATTTTTTTCATATTTGAAATACAATTTGCAGAAAATGAGAAAGCTAACTGGTTTTAAAAAAATCTCGGATGTAGTCATAAAGTTTGTGATTTAATGGTGAGATAAATATAAAATATAAAATGCAATATCTTCAAATATAAAGGTTATGTGTATTAGGCTTAAAAACTGGGACAAAGGCAGCTTTACTGAGCCTTTCTCCCATTTTTGCACCAAAAATACATAGATTTCAACACTGCTTTAACATTATGCTTATCCTGCAGAAAAGTTACATTAATTCATTGATGGTTATATATCAGAAAATTATAGTTAAACCTTATACCTTTCCCTTATATTTTCTATAATCAGGAAGTGAATAACGAACAACTAATTTCCCTAAGCTCAACAGCTAAAACATTTGAAAGGGGTACCAGAAAAAGTGATATTGTGCTACAAATATGGATTTTGTGTATTTGACAGCTGATAAATACAACTGCAAAATAAAATAAATGTGATTTCAACAGTGCTATTGAAACATAATAGAATATTTTTATCCTGTGTACTCTGGTATTTTATTTGAATGATTTAGAAATAATCAACAGCTTAATTGTCTTTTCTTTTATAAATTGCATAATACATTATTTATTTGTTTGATATTTGTTCTGATTTTTTTTTATATGTTTTTACATTTTTTCATATTTTTTTTTAACTATTTTTTTGTTATGTTTTGGAAGAATTATGTAAAAAAATATGACATGTATGCAATCCATCTCATTGTGGTCTTTGAAAACAGATGTATTTTTTTATGAAGTTCGATTCAAGGAAAAGAAGGAACAGAAAATTATTGACTGATAATAGAAAATCGGGGGAATTCCTGAGTTATCTCCCGTTGTACCTTAATCCATAAGAAAATAATTTCATTCTGCCCCTACTTAATTTGTCTATAGGAAATAACTTCCTTATGTTTTTTTTTATAGAGGAGAAAATCAAAATATTCATTTCTGGATCTTGGGGATGCTATTTTTCCTTGAACGGACAGGTCAAAATTGGACATTATAAAAGGGTTATAGATCATTGATTTTCAGTGATTTTATTTTCTAGCCAGAATCATCCCTGTGGGAAGTTTTTTTCTTCTTATTCAACAATTATAGAACATCATCTTCAAAATTTGGTTCATTGGCTATTACTACTGGTATTTATACTTGTATAAGGAAGTCTGCAAATTGATAATTATATGTATGTGGTAAAACTTATTAAATGTTGATCAATTATTTGAATCATTTGCATTTATAAATTTGTTTTACACTGTGGAGAAATATTTATT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01370	Epimerase	NAD dependent epimerase/dehydratase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001509	Domain	NAD-dependent epimerase/dehydratase	Interproscan
IPR028614	Family	GDP-L-fucose synthase/GDP-L-colitose synthase	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43238	GDP-L-FUCOSE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009226	Biological Process	nucleotide-sugar biosynthetic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0050577	Molecular Function	GDP-L-fucose synthase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02377	TSTA3, fcl; GDP-L-fucose synthase	EC:1.1.1.271	Fructose and mannose metabolism	ko00051	PMID: 28812709
K02377	TSTA3, fcl; GDP-L-fucose synthase	EC:1.1.1.271	Amino sugar and nucleotide sugar metabolism	ko00520	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_34879-4.15 global RNA-seq network