Gene detail

Detailed information of Bpl_scaf_34737-0.3 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_34737-0.3	-	Bpl_scaf_34737	10257	34961	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_34737-0.3

TGTTATTTTAGTGTACCAGTAAACATGTTCATCTGTTTTATTATGTTTTTACTATTTTTTGCAGAAAGATGCAATAATATGGGAACAAGAAATTTACAACCAGTTCAAGTACAAGACTCCAAGAGAATATTTCCATACATTTGAGGCGGATGAAATGCAAACTGGTTTAAACTTTGCCAGTGAAGATGAAGCTATCAAGTTTAAAAATGCCGTGGAGCAGAAGTTACTGGAGAAGCAAGTGAAAAAAATGGAAAGGAAAAAACAACAAGGTTCAGGAAATGCACAAAGTCCGCAGCCTACACCATCTGCTGTGAACTCCAATCAAGCCCAAACTCCTGTAGCACAAATAGAAATAAAGTCAGGATCAAATACAATAGGGAAGAATAAAGGAGGAGGAGGGAAGAAAGACAAGAAGAAAAAGCTAACAAAGGAAGATATCAGTACTCCAACAGCATTTAGACATGTTAGCCATGTTGGATGGGATCCTACAAAAGGATTTGATATGAACAACCTTGATACTGACATGAAGACATTGTTTGAACAAGTCGGTCTAAACAATTCAACAGATATTGATAAGGAGACTGTGGATTTTATCTACGACTTTGTAGAACAGCATGGTGGTATACAAAAAATCAAGGAAGAAATGAAGCAGAAACCTGCCCCGGCCGCCCCACACCACAAACATCATAGTGGTATACAAAAAACCAAGGAAGAAATGAGGCAGAGTCCTGCCACGGTCATCCTACAACACAAACATCATAGTGATAGAAAAAAACCCAAGGAAGAAATGAAACAGAGATCTGCCATGGTCACCCCACAATACAAACAGCATGGTGGCTTACAAAAAACCAAGGAAGAAATGAAGCTGAAACCTGCCACGGCCACCACACATCACAAACAGCATGACAGTATACAAAAGAACAAGGAAGAAACAAAGAAGAGACATGCTCCGGCCATCCCACAACACAATTTACCACCTCAACCTCCTCCGCCACGAAGTGCAGTGCCCCCACCCCCACCAACCAGGGGTCCTGCCACACCACAGAGGGTTGCTGCACCTCCAACTCCTAGTAGGACTAATATGCCACCGCCACCCACTCCAGCTAGACAGATGGGATCTCCTCCTGCTCCTCCATCATTTAGTGCTCCTCCTATGCCACCCCCTCAAGCAGCTAAAGTAGCATCTCCAACTCCAGCCCCAGCTCCAGCTCCAGGAGCAGGGATACCTCCCCCACCACCACCACCACCCCCTGCCCCCCCTTGTCCTCCTCCATTTTCAGACACTGCAATGCCACCACCTCCTGCACCATCAGCTGGAGTAGGAAAAGGAGCACAGCCAAAACCTGCTGCACCTGATTTGGATAGGGCCAACTTGCTGGACCTTATTCGGTCTGGAAAAAAACTGAACAAAGTTGAGAAACGTAATTCAGATGAACCAGCACAGGAAGGCGGTATTGTTGGTGCTTTAGCCATGGCATTGGCTAATAGACAAAAAATAATGCAGATGTCAGAAGATGAAGATGAAGATAGCAGTGTAGACGATGATGATGAATGGGATGATTGATTAAGTCAGTGACGAAATATGTCTAAACATTCAAAAATAGCAATATGCTTGTGTATCTATTTTAATCATTTTGAATTATGTCAGTGACGAATTATGTCTAAACATTGGAAAATAGTCATATACTGTGTATCTTTCTTCAGTCATTTTGAATTAGTCTTCATGTGTTTGTAAACGAGTGATCATTGATTATGTATAGAATATTTTCCACATATCATATTTGTACCAGCTCAGATTTTACATCATTCAACACATTATTATTCAGTTTATTGGTTTAAAGTGAGTTTTTTTTTATTATTGTATGTATTCTCATTTTAATTTGGAATGGAATCAAATAAATCATTAAATTTTACCACATTCCTTTTAAAGCAACTTGTATATTTTCTTCATTCATGAATTTTTGGAATATTATTTGAACGATCATGTCAGCAAGCCACATTATTTGTGTTACAAGGCATTTTCTAACAATAAAGTTGGGTCAGGTTTTAAAAAAAAAAACCCCAAAAAACCATTATATAAACATTTGTTTTTATCTTCTGATTTTAGCTACCTATTTATAAATTGACTCCATACCAATGAAGTGTACTCCTGACATACATATAAATAAAACCAAGAAAAACCTTCTAACTCCTCTTTGTAATAGAAAAATACATCTTTTTATACTTGTCAGCAACATCCAATGAAGTGTTTGTTGATTGTATTGCAAAATAGTTTAAAAAAAAAAAAAGCAGGGCTTTCAATATTTTTCAAGTCTACCAGTACTTTCACTATTTGCAGGCAGTACTTTTTTTAAATTAAAATTGGAACCATTTTCATGAATATCAGGAGGTCCCAAACACCATTTTATGCAGGTAAAATTACCTGGTAGTCTGGTTCCACCCCTTACTGAAAAGCCTGAAAAATCATGTTATGATTCAGTTCTGAATTTTTGAATAATTTTGTTTAGTATTACAATACTTGAAAGTATGTATTCTTTTTGTGTATAAGTAAGTAAATACAAGTGTTTGTAAACCTCAAATTAATTATTTTATATAAATATACAAACTATATACATATTATGTCAGAGTTTACGAAATTCATTAGTCCAGTCCGACATGACCAGCAAAATTTGGGACATCAGATTGGTATTTCACAATAGAAAATTAATGAGGACTAAAAAAAATTCTCTAGGACCATCAAACCCATATACAATTTCGTGAACCCTGTTATGTACCAACTGTTTGTATCATGTTGAGTTAGTTATGTGAATTGTATCACTAGATTGATATTCAGCAACAAAAATGAAGAAAAAAACTTTAATATAAAAAAACAGAATAACAGTTTTATTGAATATTGAATATTAGCTTAGCCTTAGTGGCATATTCTATCTTTAAGCCACGATATAACTGAAATACTGTTGAAAATGGCATTAAACACCATAACCCTAACCCTCTACCTTTAAGATACCAGTAAAAAGTTTACTGCTAAAAGCCAATAGGAATTGGAATCTCAGTAAACTTATCAAATTAATTGTAGATTCAACTTCTCTTTATATTAAACTCCCGTTGATAATCTGATGCACAGAAAGATGTTAATCCCTCATTATATTATATACTAAATGTCATTGAAATTAACAATAATTTTACAAAGATGTATTAATTTAATAGTAGATTCAACTGTAATCAAGTGTTTTAAACTTTTATTTCTAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00786	PBD	P21-Rho-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000095	Domain	CRIB domain	Interproscan
IPR000697	Domain	WH1/EVH1 domain	Interproscan
IPR003124	Domain	WH2 domain	Interproscan
IPR011026	Homologous_superfamily	Actin nucleation-promoting factor WAS, C-terminal	Interproscan
IPR036936	Homologous_superfamily	CRIB domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0007015	Biological Process	actin filament organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05747	WAS; Wiskott-Aldrich syndrome protein	-	Endocytosis	ko04144	PMID: 28812709
			Adherens junction	ko04520	PMID: 28812709
			Tight junction	ko04530	PMID: 28812709
			Regulation of actin cytoskeleton	ko04810	PMID: 28812709
			Fc gamma R-mediated phagocytosis	ko04666	PMID: 28812709
			Chemokine signaling pathway	ko04062	PMID: 28812709
			Choline metabolism in cancer	ko05231	PMID: 28812709
			Pathogenic Escherichia coli infection	ko05130	PMID: 28812709
			Salmonella infection	ko05132	PMID: 28812709
			Shigellosis	ko05131	PMID: 28812709
			Bacterial invasion of epithelial cells	ko05100	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_34737-0.3 global RNA-seq network