Gene detail

Detailed information of Bpl_scaf_34526-0.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_34526-0.8	ASPARTATE AMINOTRANSFERASE	Bpl_scaf_34526	62049	80811	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_34526-0.8

ATGGTAAGAAACGGACATGCTTATAGAACAGATGAAGGAAAACCATGGGTGTTACCAGTCGTAAAAACAGTGGAGGCACAAATGGCTGCGGATCCAACATTGAATCACGAGTACCTACCTATATCTGGCCTGCCAGACTACAGGACTGCTGCTGTCAAATTGTTATTAGGATCAGAATCACCAGCTATTAAAGATCATAGGGTTGAGGGATTTCAAGCCTGTGGAGGAACAGGAGCCATCAGATTGGCAGCTGATTTTCTGAAACGAATGCTTGGATTTGATACAGTATATGTCTCCAAACCTACTTGGGGAAACCATAAATCAATATTCAAGAAAAGTGGTTATTCTGATGTGAGGGAATACAGATATTGGCATGCTGAAACCAAGTCACTGGATTTTAATGGCATGTGTGAGGATTTAAATAATGCACCAGAGAAATCTGTAGTTATATTACATGGTGTTGCTCATAATCCAACAGGAGTAGACCCCACACAAGAACAGTGGATGGAAATTGTTAAGATATGTCAGAATAAAAATATCTTCATTTTGGTGGATATTGCATACCAAGGTTTTGCCACAGGAGACTTAGATACTGATGCCTTCCTGCCTAGATACCTAGACAGAAATAATTTTGAATTTTTTGCTGCTCAGTCTTTTTCTAAAAATTTTGGATTATACAATGAAAGAACTGGTAATCTTGCTGTAATATGTGCCAACCCAGAGGTCAAAGCCAGACTCCGGTCACAAATGGAAATAATTATTCGTGTCACATGGTCAAATCCACCCAATCATGGGGCAAGAATTGTTGCAACTGTTTTGAATAACCCAGCTAATTATGCTGAATGGAAAGATCATATAAAGGAAATGGCGAACAGAATTAAACAAATGAGAGTCATGTTACATTCAAAATTGAAAGCCCTAGGAACACCAGGATGCTGGGATCACATCATCCAGCAGATTGGCATGTTTAGCTTTACTGGTTTGACACCAAAACAAGTGGAGGTAATGATAAACAAATATCACATCTATTTGTTGAAGGAAGGTGGACGTATCAATATGTGCGCCATTACTACATCAAACATAGACTATGTTGCTAAGTGTATACACAGTGTAATTACTGAAGCTAAGTTATAAACAATCCTTAGTTCATCCCATTTTTGTTTAGCATTTGCTTATGTATTTTGAGGGAAATTCTGTTAAGCAGTGTCTAGAAACTCGAGATTTCCTTTTTTTTTATTTTTTACTTTAAAAATTGTTTTTGACAAATGATATACATCAATAGGTGTATTTTTAGTTTTCTTCAAATTTCTCCATCTGGTATTTAAACAAGAAAACAGGCTACATTAAATTGCAATTATTCAAAATCACAAACAAATTTGATTTTTAAATTCTAGAATTCAGAGGAATAATACAAATATCTGATCAATTCCATTGATTTGTAATTTACTTCCTTTATAGTAAAGAGAGCTGTTGGGTAGATTTGTAACAATGTTTGGTGACTGCAGAAATGATTTGATTGATTTGATTTCTTTTTATTTTGATTTATTTGTTAATTAAGAGTATGTTTTGTATTGCTTATGTCTGTTATATATACTTAGAAAACTACAAACAGGAAAGGAGAAGTTTTAAATTACTGTTGTAATAAATTGTGCCTAGTCCTTTTGATGTTGCTTAAGTAGTTTAATGTTGTCTAAATTACTGTCAGTTTTACTTCAGGAAATAGTTTATACACATGATATATGCAAAAATTATATGGTATGATTAGTTGATTTTCAAATATTAGTTCATTAAACTCTATTTTCAATTTTTTTTTATTTGCAGTAATTTTATTTTAAATTGTGACTGTTTTATGTTATTCAAGTAGAGTGATATTATGAAAATGGTGCAGATTTATTGTAAATACATTTTGAAAGCATGTTCTAAATATAGATACATGCTCTAAATATAGATACATTTATTGTCAAATAACGATGTTCTTATTGAGGTATTTTATTGTATTGCATTAAACTTTATTATACACAAATGTACTTGTAAGCCAGGCAAATAAAAAAGTCAATATTGTGGACAATAGATGCTGAAATTATTTTTTTCCCCTCTACACTGTCACATACTAATTTTTTAATGACTGTGAATTGAAAATTAGTAGAAGAATTTTTTTTATTTTCGTTCATGTTTTTGAGTTAATCCAGAGTTAGATATTATATATACATATATGATTTGTGATTTATTACGTTGGTCACTGGAAGATCAAACGTGATAGCCCAGATGGTCACGGGAAGATCACATGTGATAGCCCAGATTGTTACTTGAATATCACATAAAGGGCCAGATGGTCATATAATATATTTTGTTTTCTGTATTTCTTTGATTTAATAAACTTTATCATATGGAGTTTGACAGACCTACTTTACTATTATTTACATCATCATTGAAATTGGGCTGCTGTTGTTAACAAAAAATCTCTATGCACGTCAAATCATGTTTATAATTTACATAGATTTTTTAAATGTCTCTACTATTTGTTTTGATTTGTCAAATTGAGATGTAGCCAATTTAATTTATTGTGACTGTTTTATTTTTATTTTGTGAATGTACAGATTTCTGTGGGTTACCTTTGAGAACTTACATTTGTATATTAGTAAATAAAACATATTAAAAATTTCTCAACCAATTTATCCCCACTCTATTTCTGCACTTGTGCTTTACTGGGAACTAGATCTCAGTCAGCATTTGTCATTGTCCTTGTTATTAAGAGTTTTAACATTTAACATGTAGTGGAATTGTTGATCATTACTTTAATTTAAAATTTTTAGATTTTACAAATATAATAAGTGTGATAATTCAGTTAAATTCAATACATATGTGCTAAAGGGTTTTAATTTTACTTGATTGACTAAAGCAAGGAAATCCACAGAAATTGGTACTGAATTTAAGAAAAATAATAATATATGCTTAGCTAATATACAATTTGAATTGCAAATAAATAGTTTTACCTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000796	Family	Aspartate/other aminotransferase	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11879	ASPARTATE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004069	Molecular Function	L-aspartate:2-oxoglutarate aminotransferase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0006532	Biological Process	aspartate biosynthetic process	Interproscan
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14454	GOT1; aspartate aminotransferase, cytoplasmic	EC:2.6.1.1	Carbon metabolism	ko01200	PMID: 28812709
			2-Oxocarboxylic acid metabolism	ko01210	PMID: 28812709
			Biosynthesis of amino acids	ko01230	PMID: 28812709
			Carbon fixation in photosynthetic organisms	ko00710	PMID: 28812709
			Alanine, aspartate and glutamate metabolism	ko00250	PMID: 28812709
			Cysteine and methionine metabolism	ko00270	PMID: 28812709
			Arginine biosynthesis	ko00220	PMID: 28812709
			Arginine and proline metabolism	ko00330	PMID: 28812709
			Tyrosine metabolism	ko00350	PMID: 28812709
			Phenylalanine metabolism	ko00360	PMID: 28812709
			Phenylalanine, tyrosine and tryptophan biosynthesis	ko00400	PMID: 28812709
			Isoquinoline alkaloid biosynthesis	ko00950	PMID: 28812709
			Tropane, piperidine and pyridine alkaloid biosynthesis	ko00960	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_34526-0.8 global RNA-seq network