Gene detail

Detailed information of Bpl_scaf_34427-9.6 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_34427-9.6	ALDEHYDE DEHYDROGENASE-RELATED	Bpl_scaf_34427	929070	951618	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_34427-9.6

TATTTTTGTGACCTTGTTCTATATGTTTAATGTATCGTGATGACCGCATTGATAGTACAAAAAAGTTAACATTACGATTTTTATTGTATTAACAGTGCATTGTGAAATAAACAACAAAAGATCAAATATAACAAGATGGCATTACCTACACCAGAAGTAAAACCAGAAATCAAATATACTAAGATTTTCATCAACAATGAATGGGTGAATTCAGCCAGTGGGAAGACATTTCCAGTTGTTAATCCATCTACAGGAGACAAAATTATTGATATCCAAGAAGGCGACAAGGCAGACATTGATAAGGCAGTGAAGGCGGCACAGGAAGCATTTAAACCGGATGCAGCATGGCGGACTATGGATTCCAGTACAAGAGGAGAGTTGCTACACAAACTAGCGGATCTTATTGAACGGGACGCTGTTCACATAGCTAGCTTGGAAACTCTTGACAACGGGAAGCCGTTTAAAGATTCGTATGGTATTGACATTCCGTATACTATAAAATGTCTTCGTTATTTTGCTGGATGGTCAGATAAAATCCAAGGAAAGACAATTCCAATAGATGGAAACTTTTTCTGCTATACAAAACATGAACCAGTTGGAATATGTGGACAAATAATTCCATGGAACTTCCCATTGCTTATGATGGCTTGGAAAATCGGACCCGCTCTATGTTGTGGGAATGTTATTATACTGAAGCCAGCAGAACAAACTCCACTCACAGCACTTTATACAGCACAGCTGGCTAAAGAGGCTGGTTTTCCACCAGGAGTATTAAATGTAATTCCTGGATACGGATCAACAGCTGGAGCGGCTATCTCTGAACATCCGGACATTGATAAGGTGGCATTTACCGGATCAACTGAGATTGGACAAGTAGTAATGGGAGCTGCGGCAAAAACTAATTTGAAACGTGTAACATTAGAACTGGGTGGTAAAAGTCCAAGCGTAGTGTTTGCAGATGCTGATCTGGATTTAGCAGTTGAACAGACCCACTTCGGACTTTTCTTCAACATGGGACAGTGCTGTTGTGCTGGTTCACGGACATATGTTCAGGAAGAAATATATGAAGAATTCAAAAAGAAACTGGTTGAAAAGGCAAAGAAAAGACCTGTTGGAGATCCCTTTGATGCTAAAAATGATTCAGGACCCCAGATTGATCAAGACCAGTTTGACAAGATCCTCAATTTGATAGAAAGTGGGAAAAAAGAAGGTGCTAAGTTGGAATGTGGTGGGAAGAGACTAGGAACCAAAGGTTTCTTTATAGAACCAACTATATTCTCTGATGTTAATGAAGATATGAGGATTGGAAAGGAAGAAATATTTGGTCCAGTGCAACAACTCATTAAATTCAAGACTATGGATGAAGTCATTGAAAAAGCCAACAACACAGCATATGGTCTGGCAGCAGCCGTCTTCACTAAGGACATAAACAAAGTCATGACATACACCAGTCGTGTTAAGGCCGGAACCGTTTGGTGATTGTAAACACGCCTACAAAAGTATGAACATTATATATCTGCTGCTTCTTAGACCAATTACAATCAACTCTGCATTTATGTACAGTCAATGGACATACGTATTCGTGATTTTGACGTCGTAACGTCATTACTGCAAAATTTTAACTTGGGAACAAACGTTCAATAAAAATGTTTAGAACAATATCCTACCTTAATATTTTGTCAGGTGACCCTTCATCCTAATGACTTCACGTATCCGTGTTGGAATGGTTTGATAAAGTCCCTGAATATAGTTTACGGGGAGACTTTCCCACACACGTCGAATTTCGGCAATAAGTTCGTTTTGGGTGTTGATGTTTCCTGCGACTGGTTGTAGTTCCATCTTTATGCGAAGCCAAACATTTTCACACACATTTAAGTCCGGAGATTGTGCTGGCCACGTAGTACAATTTATATCATTTTCCTGTTTGTAGTTTTCGGTAATTCGGGCACGATGTACAGGTGCGTTATCATCTTGAAAGACATACTCATTGTCAGCAAAATATCGTGCAATTACAGGCCACACATTATTTTCAAGAATATCTATATATATCTGGGAATTAATATTCCCTTTTACATCAGTTAAAGTTCCGATCCCGTTAAAAGATCAACACCCCCAGATCATCACACTTACTTTACGTTGGGAAGGTCGGCATACTAAATCAGGACGGTTAACTTCGTCACCTTTCCTCCAGACATAAATACGGTTGTTTGATCCAACAATTATCTGACTTTCTTCAGAATATATATATTTCCTCCAGTGCGAATCAGCAGTCCAGTTACGTCTTTCCCTACACCATGCCACCCTCTTTTTACGGTTGACTTCGCGAATAATGACACACTTTTTTGCAGCTCGTCGTTTGCAACCTTCAGATGCTAGTTTCCTTCTGATAGTTCTACTGCTGAACGAATGCTGTTTACTGTCATTAAATTTGGTGGTTATTTCCTGCAAAGGTGCCCGACGATTTTTTTTCACAAGACGATTTAACCCAACTTCATCCCGGGCAGTGAACAATTTTCGTCTCCCTTTTCGTGGTTGATTTTCTACTGTTCCAGTTGACCGATATTTTTTAACAACACTGTCAATTGTTGACCAGGGTATGTCCAATAAATCAGCAATATACGACCTCCTTTCCTTTTTCCTATGCAACTTCACGATCAATTCTTTGGTTTCTGTGCTCAATTCTTTGCGTTTGCGACCCATCTCGTTTGTGTACAATTTACAGGAAGGAATCACAACAGACGTAAAATGACGTCACGGCTCACGAGACGTCTTGTTTTCACTTACCTTTTACAGTAATATCATAATTATCCGAACTGACGTTTTAATGTAATGACCAAAAACGTAATCAACATGTATTGCAGTCGGAAGGCCGCCATATTGAAAATCACGAATACTTATGTCCATTGACTGTATATTATTATTGGTACTGATATTTTGTAAATTTACATGAGGAAAGTATTAATATATCTGGATATTATTCAATTCTTTTTGTAATGTTAATGAAACATAATTAAATGAGAGTATGTTTTTATTTACCTTTAAATAAGTTATTTATATTGTTCATACCTGCATATTTAATAAACACTACTTTGACATTTTGCGATTCTTTAAAAAAAAATGTCATTAAAACATTTTTAATAATAAGATGAAATATCGGTAGTGTATTATCAATTAAAATTTTGACTCCCAGTTTTTGCTGCTGATACTATATATACAATACAAAGCTGAGCTTGAACAGGATGTGTAAACAAGGAAAGAAGATAACATCTTTACTGCACAGACAATCAATTATATTTATTTATTTTCTTGTTTATTTATGTGTTAAAGAACGTACTTGGTTTATGTTAGCAAGTAATAACGATATTTTAATAAATAAAATATATCTTACAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015590	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR016160	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR016161	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR016162	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR016163	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR029510	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11699	ALDEHYDE DEHYDROGENASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004029	Molecular Function	aldehyde dehydrogenase (NAD+) activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016620	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07249	ALDH1A; retinal dehydrogenase	EC:1.2.1.36	Retinol metabolism	ko00830	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_34427-9.6 global RNA-seq network