Gene detail

Detailed information of Bpl_scaf_34315-5.22 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_34315-5.22	RNA POLYMERASE II CTD PHOSPHATASE	Bpl_scaf_34315	505021	521016	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_34315-5.22

ATGTTACCACAAAGGAGATCAATTCTAGTCACAATTGAACCGTGTAAACATCCAACTGTCATGAAAGATATGTGCGCAGAATGTGGGGCCGATTTGAGGGAAGAAGCAGGACTAGCTGGAGAAAGGAGAGAACCAGTCACAGCTACTGTTGCCATGGTACACAGCATTCCTGAATTAATTATCAGTGAAGAGCAAGCAAGAGAAATAGGCAGAGAAGATGAAAACAGACTGTTAAAAACAAAGAAGTTGGTTCTGTTGGTAGATTTAGATCAAACATTGATACACACAACCAATGACAGCATTCCAGCTAATCTGAAGGGAGTTTTTCATTATCAACTACGCCATGGCAATGGTTTAATGTGGTATCACACAAGGATAAGGCCAGGAACTCAACACTTTTTGGAGACGATTTCCAAGATGTATGAGCTACACATATGTACATTTGGTGTTCGAATGTATGCACACACAATTGCAAGATTTTTGGATCCAGATGAAAAATATTTCTCTCACAGAATATTATCTAGAGATGAATGTTTCAATCCAAACTCTAAAACAGCTAATTTGAAGGCTTTGTTCCCACGTGGTGACAAGATGGTGTGTATTATTGATGATAGAGAAGATGTTTGGAATTTCGCTCCAAATTTGATTCATGTGAAACCCTATAGATTTTTTCAAGGAACTGCAGATATAAATGCACCTCCTGGACTAACTAAAAACGAACATGATTCAGAACCCGTACATCACCAAGTCAGACGTGTGTCAAGGTCACATTCTGTTGATAAGGAGAAGGAAGATGAAGAGGTCAAGGTTGATAGTAAAGAAATAAAGGGGGACAACTCAAAATCAGTAATGGAAGGGGAAAGTGATAAATCTGAGTTGAATATAGTATCAGGAGACAATGAAACAGAAAATAAAGATGACATAAAACAGAATGTTAAACAAGATGAGAGTGAAAATATTTTTGTAGACAAATTAAATGAAATGAAGACGGAACATTCTGTTGATAATGACACAAAAAAACTAAGTGGTAGTCATAGTGACAGTGAGAATAATAATCAAAATGTTCGGGACCAAAGTGACAGCGTGTTAGAATGTGTTGACCAATCCGAATTAGAGATTAATAATGATATGAACCAATCAGAGAAGGGAGAAGAAAGTGACAATGTTAATAGTATATCAAAATACGCAGACAATACAAATTCTGAAGAAGTAGATAAAAATAAAATTACGTCAACAATTGAAACAAAATCCAAAGAAACTGATGATGTAGGATCAAGAGAAAACATTGAAGAAACTGGTATGGAAATAGATAATAAAACTCCTGATGAAATAGATAAAACAGAAGATGAAAGCAGTCTTTCATCGACCAAAGAAACGATGACCAAGGAATCTGACGGTGCTAATTCTGATGATGCAATAAATGAAGAGGCAAATATTGACAATTTGGCAGACGATGATATTGAAATCGAATGGGACGATGAAGATGACTATTTGTTGTATCTTGAAGAAATTCTTACAAGAATTCACAAAACTTTCTTTGATTTTAATGACGAGTTAAAATTGAAAAAAGAGAAAAATGAAATACCAGATCTCAAAGACATTATTAGTTACATTAAAAGGAAGGTTCTAAAAGGCGTGAATGTAGTATTTAGTGGTGTATTTCCAACAAATATTGCTCCTGAGAAAAGCAGAGCTTTTATTGTAGCAAAGGCACTTGGAGCTAATGTGCATACAAACATTATACCTAAATCTGATGTGGAGAAAGGTCTATCAACTACTCATCTTGTGGCAGCAAAGTTGGGAACGAGCAAAATAAGAATGGCTCAAAAGGTTAAGGGAATAAAAATTGTTAATCCAAACTGGTTATGGAATTGTGCTGAACGTTATGAACACGTTGATGAGCGATTATTTCCATTAGATAAAGAATCTTATAAAATGGAAAATTGTGATAGCCCCGACTTCACTAAAGATAAAAATAGAAAGAGAAAATTTGGTCCAGAAGAATTAAATGACGAATCTAATTCAGGAAAACGTCTTAGAAAGAGTGACAGTGAATCAGCACAAATTTTGGCTGGTGACAATTCAAATGAGGCTTCAACCTCTGTTCAAACAGCTGAAAATGAAAATCCTGTGTTTGTCAGCACATTCAACCCATTGTTAGCATTTTCTGATGATGATCTGGCTTGTATGGACAAAGAGGTTGAGGAAATCATGGATGAAGATCAAGACAACAATTCATCAGAGGATGAGGATGAGAGGGATTCTAGAATGAGGTCGTTTGTACTTAGTGAAAATGCTTCCTCTTCTGAAGACAGTTTGTCAGGAGATTTACCTAGAGGTTGGAAACGGAAAGATTCAGGGTCGAGTGAAAGTCCTTGTAGCTCGGAACACGGTAGAAATAATGACATTGAAAGTGATAATGACCTTGAAAAGTTTGAGAACACTGTTAAAGCATTTGCTCCTGATTCTGAATCAGATAATGAATCTATTGGGTCAATGGACGATGAAATGGCAGCAGCTATAGAGAAAGAATTTCTTGAACTGTGA

Transcript

Bpl_scaf_34315-5.22

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF03031	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001357	Domain	BRCT domain	Interproscan
IPR004274	Domain	FCP1 homology domain	Interproscan
IPR011947	Domain	FCP1-like phosphatase, phosphatase domain	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR036420	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR039189	Family	CTD phosphatase Fcp1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23081	RNA POLYMERASE II CTD PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004721	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008420	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0070940	Biological Process	obsolete dephosphorylation of RNA polymerase II C-terminal domain	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15732	CTDP1, FCP1; RNA polymerase II subunit A C-terminal domain phosphatase	EC:3.1.3.16	Protein phosphatases and associated proteins	ko01009	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_34315-5.22 global RNA-seq network