Gene detail

Detailed information of Bpl_scaf_3428-3.9 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_3428-3.9	MALE STERILITY PROTEIN 2-RELATED	Bpl_scaf_3428	296825	330841	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_3428-3.9

CGCTGTTTGAGACACTTCCTTTTTGATAGGTTACAGGTGAATAAATAGACCATGGCATAGGAGAACAATGAGTTCCTCAACAATGAGTTCCTCTATTCCATCAATCCCAGAGTTCTATCGTGATAAATGTATTTTTATTACTGGAGCTACTGGGTTTATGGGCAAAGCTTTGATAGAAAAATTACTGCGATCCTGTCCAGATATAAAAACACTATATCTTCTAGTGAGGCCAAAGAAAGGGAAAGAACCAGAACAAAGGATCGAGGAAATAATTTCTAGCAAGCTTTTTAACAAATTAAGAGCAGAGCAGCCTGAGTTCCAAAAAAAACTTATACCAGTTTGTGGAGATATTCTACATGAAAACTTAGGAGTTTGTAGGACAGATGAACAAAAAATGATAGATGATGTGGATATAGTCTTCCACTCAGCAGCGACTGTCAGATTTGATGAAGAAATGAAGCTTTCTGTTGACATGAATATTCATGGTGTAAACAGAGTTCTTATGTTCTGTAAGAAGCTAATTCACTTAAAGTCATTTCTGCATGTGTCCACTGCCTATGCCAACTGTAATGAGATGAAAATAGAGGAGAAGATATATGAACCACCTCTTCATCCTAGCAAAATATTAGAGGCTGCAGATTGGATGGGAACAGAAATAATGAACATATTGACCCCAAAGATGATAAAAGACAGACCAAATACTTACACCTACACAAAATCAATAGCAGAATATCTTGTTTATGAGGCCAGAGGAGAATTACCAGTAGCCATTTTCAGACCATCAATTGTTGGTGCATCCTGGGAGGAACCAGTTCCTGGATGGGTTGACAACTTTAATGGCCCTACTGGTTTACTAGCAGCAATAGGAAATGGGTTATTAAGAAGTATGGTTGGTAATTTTCATGGAATAGCAGACATTATACCAGTAGATACAGCATCAAAGATGATGATAGCATGTGCCTGGAATACAGCAATAGACAAATCTTCAGTATCAAAAGTATACCACTGCACGACAGGCCAGTTGAACAAATTTACATGGGGACAGATAGAAAGAATGTCGGAAGAATATTTTATAAAAAATCCAGTAAATACAGTTGCCAGAATACCTAATCCAAAGTTTACAAAAAGTTTAGTATGGCACGAGATAAACATGTTATTTGATCATCTTATACCTGCCTATATCATGGACTTTTTTATGTGGATCAGTGGTAGAAGAACTATATTTGTGAAAATACATGAGAGACTAAGAAAGGCAGTGGCCAGTTTAGATTTTTTCACATCAAATGAATGGCAGTTTACCAACGATAACCTGTATATACTACTGAATAAGTTGACACCAGAGGACAGAAAGGAGTTCAACTTTGATCCAAAATTAATAGACTGGACTAAATATATGGAGGCTTATTGTCTAGGAACAAAGCAGTATGTGTTGAAGGAAGAGCTTTCAGAATTACCACGGGCACGGAAAACACTCCAGAGGCTCCAAAGGATAAATTTATTCATCAATGTGTTCGGCTTTATTGTTATATGGAGGTTGCTGATGAACCGATTTAAGTTAGCCAAGTCATTGTGGAACTTCTTGATGGGATGGGCAATGAAGATATTTAAAAGTTTACCTACATTAGTGAAGTCCTCCTGATAAACATTCTAAATATACATAAACACCTATTTATTGTCTGTGATATAGAACAGTAAATTAATGATATTAAATGTAGTAGAGCCCGGTGTTACGTCATTGAATGATCATACAACAATCAGATCTAATTTAATGAATAAATTTATATGCATTAGGCCTATATTTAATACATGTAATTTTATGTAAAGCCCGGTGTTACGTCATTGAATGATCAAACGACAATCAGATCTAATTTAATGAATAAATTTATATGCATTAGGCCTATATTTAATACATGTAATTTTATGTAAACCCCGGTGTTACGTCATTGAATGATCATACAACAATCAGATCTAATTTAATGAATAAATTTACAATTTGTATATGCATTAGGCCTATATTTAATACATGTAATTTTATTTAATGCCCGGTGTTACGTCATTGAATGATCATACAACATCACATTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03015	Sterile	Male sterility protein	Family	Interproscan
PF07993	NAD_binding_4	Male sterility protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013120	Domain	Fatty acyl-coenzyme A reductase, NAD-binding domain	Interproscan
IPR026055	Family	Fatty acyl-CoA reductase	Interproscan
IPR033640	Domain	Fatty acyl-CoA reductase, C-terminal	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11011	MALE STERILITY PROTEIN 2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005777	Cellular Component	peroxisome	Interproscan
GO:0035336	Biological Process	long-chain fatty-acyl-CoA metabolic process	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0080019	Molecular Function	alcohol-forming very long-chain fatty acyl-CoA reductase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13356	FAR; alcohol-forming fatty acyl-CoA reductase	EC:1.2.1.84	Cutin, suberine and wax biosynthesis	ko00073	PMID: 28812709
			Peroxisome	ko04146	PMID: 28812709
			Longevity regulating pathway - worm	ko04212	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_3428-3.9 global RNA-seq network