Detailed information of Bpl_scaf_3387-5.48 in Gigantidas platifrons Gene info
Gene IDAnnotationScaffoldStartEndStrand
Bpl_scaf_3387-5.48NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGBpl_scaf_3387674909688463+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01189Methyltr_RsmB-F16S rRNA methyltransferase RsmB/FFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001678DomainSAM-dependent methyltransferase RsmB-F/NOP2-type domainInterproscan
IPR023267FamilyRNA (C5-cytosine) methyltransferaseInterproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR049560DomainSAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR22807NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAININGInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0008173Molecular FunctionRNA methyltransferase activityInterproscan
GO:0070475Biological ProcessrRNA base methylationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15264NSUN5, WBSCR20, RCM1; 25S rRNA (cytosine2278-C5)-methyltransferaseEC:2.1.1.311
Ribosome biogenesisko03009PMID: 28812709

Expression pattern
 1. Expression trend for Bpl_scaf_3387-5.48 global RNA-seq network
TOP